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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-AA_A.duranensis_x_A.duranensis_a
(Reference Set)
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Correspondences
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Maps A01
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.duranensis_a [ View Map Set Info ]
Map Name: A01
Map Start: 0 cM
Map Stop: 96.824 cM
Features by Type:
111 SNP
75 SSR
186 Total

Map Features

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Items 1 to 25 of 186.       of 8 | Next
peanut - AA_A.duranensis_x_A.duranensis_a - A01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SNP770 SNP 0 No other positions
RGC108b SSR 0.316 No other positions
SNP1012 SNP 0.316 No other positions
SNP1063 SNP 0.316 No other positions
SNP716 SNP 5.177 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 DS_c4214_1102 SNP 4.4 (cM) Automated name-based, Automated name-based View Maps
SNP370 SNP 5.629 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 DS_c1383_590 SNP 4.4 (cM) Automated name-based, Automated name-based View Maps
SNP984 SNP 5.629 No other positions
SNP1035 SNP 8.211 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 DS_c9263_191 SNP 4.4 (cM) Automated name-based, Automated name-based View Maps
GM24 SSR 9.333 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 TC2E05_c1 SSR 40.524 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 TC2E05_c2 SSR 59.282 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG04 Ah1TC2E05 SSR 37.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC2E05 SSR 392.9 (cM) Automated name-based, Automated name-based View Maps
GM1030 SSR 12.848 No other positions
GM825 SSR 12.848 No other positions
SNP25 SNP 15.128 peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895448_1 SNP 101.75 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_221_TOG895448_1_423 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895448 TOG 48,199,556 - 48,206,326 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895448 SNP 72.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_375_TOG895448_1_694 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_350_TOG895448_1_844 SNP 67.44 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895448 TOG 55,982,420 - 55,987,190 (cM) Automated name-based, Automated name-based View Maps
SNP850 SNP 15.48 No other positions
SNP308 SNP 15.964 No other positions
SNP415 SNP 18.369 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 DS_c1562_542 SNP 11.4 (cM) Automated name-based, Automated name-based View Maps
SNP717 SNP 19.065 No other positions
SNP498 SNP 20.802 No other positions
SNP979 SNP 20.802 No other positions
GM1331 SSR 22.884 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 GM1331 SSR 51.938 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 GM1331 SSR 66.27 (cM) Automated name-based, Automated name-based View Maps
SNP454 SNP 23.471 peanut - AA_A.duranensis_x_A.stenosperma_d - A01 DS_c17603_90 SNP 17.4 (cM) Automated name-based, Automated name-based View Maps
GM1118b SSR 24.055 No other positions
GM1761 SSR 24.096 No other positions
GM2022 SSR 24.112 No other positions
SNP14 SNP 25.416 soybean - GmJGI8x - Gm08 TOG894638 TOG 44,315,884 - 44,333,178 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894638 TOG 18,889,396 - 18,895,117 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894638_470 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894638 TOG 6,814,948 - 6,821,939 (cM) Automated name-based, Automated name-based View Maps
SNP146 SNP 25.416 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG902902 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG902902 TOG 7,033,647 - 7,037,463 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG902902 TOG 18,686,857 - 18,690,445 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG902902 TOG 44,137,986 - 44,141,485 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG902902 SNP 8.9 (cM) Automated name-based, Automated name-based View Maps