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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-AA_A.duranensis_x_A.duranensis_a
(Reference Set)
Min.
Correspondences
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Maps A02
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.duranensis_a [ View Map Set Info ]
Map Name: A02
Map Start: 0 cM
Map Stop: 103.928 cM
Features by Type:
73 SNP
46 SSR
119 Total

Map Features

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Items 1 to 25 of 119.       of 5 | Next
peanut - AA_A.duranensis_x_A.duranensis_a - A02
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Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM2845 SSR 0 No other positions
SNP628 SNP 2.08 No other positions
SNP398 SNP 3.172 No other positions
SNP395 SNP 4.037 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 DS_c1458_262 SNP 81.7 (cM) Automated name-based, Automated name-based View Maps
GM2186 SSR 4.663 No other positions
GM2232 SSR 6.13 No other positions
SNP853 SNP 6.162 No other positions
SNP522 SNP 6.446 No other positions
GM922 SSR 6.83 No other positions
GM1355 SSR 6.982 No other positions
SNP416 SNP 6.982 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 DS_c1565_477 SNP 78 (cM) Automated name-based, Automated name-based View Maps
SNP820 SNP 7.572 No other positions
SNP1068 SNP 8.406 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894890 SNP 28.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_561 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG894890_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG894890 SNP 77.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894890 TOG 6,621,911 - 6,623,360 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG894890_927 SNP 77.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_038_TOG894890_1_175 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_184 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
SNP249 SNP 8.665 No other positions
SNP551 SNP 11.368 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 DS_c2408_432 SNP 76 (cM) Automated name-based, Automated name-based View Maps
SNP772 SNP 11.368 No other positions
GM1655 SSR 11.387 peanut - TT_Tifrunner_x_GT-C20_b - LG17 GM1655 SSR 42 (cM) Automated name-based, Automated name-based View Maps
SNP3 SNP 12.555 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1025 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894171 SNP 8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_146_TOG894171_2_715 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG894171_2 SNP 4.56 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894171 SNP 70.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894171 TOG 41,377,729 - 41,380,871 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1067 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
GM817 SSR 15.442 No other positions
GM2838 SSR 15.842 No other positions
SNP852 SNP 17.592 No other positions
RGC193 SSR 18.1 No other positions
SNP53 SNP 20.659 cowpea - VuCookUCDavis2009 - VuLG10 3_208_TOG896540_2_795 SNP 31.37 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896540 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_239 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG896540_2 SNP 17.05 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896540 TOG 23,076,499 - 23,078,083 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_334 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896540 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896540 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896540 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG896540 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG896540 SNP 71.3 (cM) Automated name-based, Automated name-based View Maps
SNP405 SNP 22.908 No other positions
GM2808 SSR 24.378 No other positions