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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set peanut-AA_A.duranensis_x_A.duranensis_a
(Reference Set)
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Correspondences
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Maps A04
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.duranensis_a [ View Map Set Info ]
Map Name: A04
Map Start: 0 cM
Map Stop: 115.834 cM
Features by Type:
80 SNP
69 SSR
149 Total

Map Features

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Items 1 to 25 of 149.       of 6 | Next
peanut - AA_A.duranensis_x_A.duranensis_a - A04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SNP142 SNP 0 soybean - GmJGI8x - Gm08 TOG902710 TOG 18,317,437 - 18,322,966 (cM) Automated name-based, Automated name-based View Maps
SNP845 SNP 0 No other positions
SNP857 SNP 3.482 No other positions
GM1840 SSR 3.927 No other positions
SNP597 SNP 4.577 No other positions
GM2014 SSR 6.601 No other positions
SNP306 SNP 8.08 No other positions
SNP59 SNP 9.208 barrel medic - Mt3.0 - MtChr3 TOG896744 TOG 27,415,846 - 27,418,369 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG896744 SNP 57.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_085_TOG896744_1_618 SNP 15.21 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896744 TOG 26,800,519 - 26,803,360 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG896744 TOG 12,017,757 - 12,020,131 (cM) Automated name-based, Automated name-based View Maps
GM2091 SSR 9.466 No other positions
SNP227 SNP 12.359 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG937860 SNP 57.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG937860_161 SNP 22.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG937860 TOG 2,310,343 - 2,313,299 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG937860 TOG 9,625,310 - 9,627,784 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_073_TOG937860_1_227 SNP 21.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG937860 TOG 34,204,540 - 34,207,128 (cM) Automated name-based, Automated name-based View Maps
GM1120 SSR 14.839 No other positions
SNP822 SNP 15.938 No other positions
SNP458 SNP 16.518 peanut - AA_A.duranensis_x_A.stenosperma_d - A04 DS_c1785_157 SNP 5.8 (cM) Automated name-based, Automated name-based View Maps
SNP881 SNP 16.711 No other positions
GM2010 SSR 25.991 No other positions
SNP235 SNP 27.994 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG948068 SNP 12.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG948068_1 SNP 28.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG948068 TOG 5,619,509 - 5,622,295 (cM) Automated name-based, Automated name-based View Maps
SNP97 SNP 27.994 peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG899297_2 SNP 28.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG899297 TOG 15,173,720 - 15,177,049 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG899297 SNP 70.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG899297_455 SNP 99.9 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 3_292_TOG899297_2_600 SNP 66 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG899297 TOG 539,723 - 542,875 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG899297_685 SNP 7.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG899297 SNP 8.4 (cM) Automated name-based, Automated name-based View Maps
GM1528 SSR 29.106 No other positions
SNP225 SNP 29.741 barrel medic - Mt3.0 - MtChr2 TOG930652 TOG 6,669,428 - 6,671,378 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG930652_1 SNP 21.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 3_054_TOG930652_1_784 SNP 52.84 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG930652 TOG 7,578,554 - 7,580,445 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG930652_354 SNP 76.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG930652 SNP 12.1 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG930652 SNP 51.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG930652 TOG 56,425,121 - 56,426,703 (cM) Automated name-based, Automated name-based View Maps
SNP313 SNP 31.533 peanut - AA_A.duranensis_x_A.stenosperma_d - A04 DS_c12179_148 SNP 12.1 (cM) Automated name-based, Automated name-based View Maps
SNP563 SNP 31.533 No other positions
SNP976 SNP 31.533 No other positions
GM76 SSR 32.569 peanut - TT_Tifrunner_x_GT-C20_b - LG9 Ah2TC7G10 SSR 69 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A04 TC7G10_c1 SSR 26.823 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 TC7G10_c2 SSR 43.914 (cM) Automated name-based, Automated name-based View Maps
SNP571 SNP 33.08 No other positions
GM1647 SSR 34.681 No other positions