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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-AA_A.duranensis_x_A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A09
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.duranensis_a [ View Map Set Info ]
Map Name: A09
Map Start: 0 cM
Map Stop: 106.487 cM
Features by Type:
113 SNP
58 SSR
171 Total

Map Features

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Items 1 to 25 of 171.       of 7 | Next
peanut - AA_A.duranensis_x_A.duranensis_a - A09
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SNP358 SNP 0 No other positions
SNP467 SNP 4.739 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 DS_c18439_78 SNP 78.3 (cM) Automated name-based, Automated name-based View Maps
GM1174 SSR 5.276 No other positions
SNP673 SNP 6.627 No other positions
SNP477 SNP 7.004 No other positions
GM1856 SSR 7.414 No other positions
GM1835 SSR 7.415 No other positions
SNP615 SNP 7.932 No other positions
SNP256 SNP 8.497 No other positions
SNP350 SNP 11.292 No other positions
SNP640 SNP 12.592 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 DS_c33996_97 SNP 73.4 (cM) Automated name-based, Automated name-based View Maps
SNP516 SNP 14.627 No other positions
GM2438 SSR 21.69 No other positions
GM1600 SSR 23.686 No other positions
GM324 SSR 23.724 peanut - AA_A.duranensis_x_A.stenosperma_a - A09 Ah-649 SSR 21.2 (cM) Automated name-based, Automated name-based View Maps
SNP441 SNP 23.748 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 DS_c1696_1055 SNP 67.2 (cM) Automated name-based, Automated name-based View Maps
SNP1017 SNP 24.317 No other positions
SNP599 SNP 24.317 No other positions
GM1338 SSR 24.689 No other positions
GM2120 SSR 24.689 peanut - TT_TAG24_x_ICGV86031_a - LG_AhIX GM2120 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIX GM2120 SSR 59.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIX GM2120 SSR 74.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIX GM2120 SSR 35.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIX GM2120 SSR 40.542 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B09 GM2120 SSR 73.06 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B09 GM2120 SSR 97.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B09 GM2120 SSR 90.386 (cM) Automated name-based, Automated name-based View Maps
SNP887 SNP 24.689 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 DS_c6612_152 SNP 66.6 (cM) Automated name-based, Automated name-based View Maps
GM1237 SSR 27.017 No other positions
SNP149 SNP 28.206 cowpea - VuCookUCDavis2009 - VuLG10 4_341_TOG903757_1_192 SNP 77.37 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG903757 TOG 32,619,568 - 32,624,313 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14 Ah2n_TOG903757_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG903757 TOG 50,697,925 - 50,704,741 (cM) Automated name-based, Automated name-based View Maps
SNP774 SNP 28.206 peanut - AA_A.duranensis_x_A.stenosperma_d - A09 DS_c4860_235 SNP 62.9 (cM) Automated name-based, Automated name-based View Maps
SNP948 SNP 28.651 No other positions