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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_a
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps A02
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
CAPS
Marker
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_a [ View Map Set Info ]
Map Name: A02
Map Start: 0 cM
Map Stop: 382 cM
Features by Type:
7 AFLP
13 CAPS
2 SNP
29 SSR
7 Marker
58 Total

Map Features

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Items 1 to 25 of 58.       of 3 | Next
peanut - AA_A.duranensis_x_A.stenosperma_a - A02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Leg208 CAPS 0 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Leg208 CAPS 131.119 (cM) Automated name-based, Automated name-based View Maps
RN2F12 SSR 3 peanut - AA_A.duranensis_x_A.stenosperma_d - A10 RN2F12 SSR 73.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 RN2F12 SSR 63.324 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 RN2F12 SSR 126.012 (cM) Automated name-based, Automated name-based View Maps
Leg104 CAPS 5.1 No other positions
Leg128 CAPS 22.4 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Leg128 CAPS 121.76 (cM) Automated name-based, Automated name-based View Maps
Ad14A Marker 42.9 No other positions
Leg242 CAPS 55.2 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Leg242 CAPS 102.597 (cM) Automated name-based, Automated name-based View Maps
Leg33MGm Marker 61.4 No other positions
TC7H11 SSR 65.8 peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 TC7H11.A10 SSR 67.15 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXII TC7H11 SSR 23.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A10 TC7H11 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB10 TC7H11 SSR 27.805 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG05 Ah2TC7H11 SSR 29 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC7H11 SSR 50.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC7H11 SSR 34.289 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII TC7H11 SSR 70.4 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B10 TC7H11 SSR 101.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 TC7H11.B10 SSR 54.88 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII TC7H11 SSR 14.376 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXII TC7H11 SSR 27.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG12 TC7H11 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII TC7H11 SSR 70.4 (cM) Automated name-based, Automated name-based View Maps
Leg159 CAPS 73.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Leg159 CAPS 88.964 (cM) Automated name-based, Automated name-based View Maps
Leg160 CAPS 73.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Leg160 CAPS 91.834 (cM) Automated name-based, Automated name-based View Maps
Ah-074 SSR 75.3 No other positions
TC11A02 SSR 78.2 peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 TC11A02 SSR 42.55 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC11A02 SSR 44.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC11A02 SSR 26.915 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG5 Ah2TC11A02 SSR 21.8 (cM) Automated name-based, Automated name-based View Maps
TC4A02 SSR 78.2 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII TC4A02 SSR 96.26 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB10 TC4A02 SSR 23.326 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG5 Ah1TC4A02 SSR 12 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC4A02 SSR 26.981 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC4A02 SSR 44.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 TC4A02.A09 SSR 82.86 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG13 TC4A02 SSR 28 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 TC4A02.B10 SSR 49.06 (cM) Automated name-based, Automated name-based View Maps
IPAHM689 SSR 79.6 peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 IPAHM689 SSR 21.724 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 IPAHM689.A06 SSR 260.19 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 IPAHM689.B10 SSR 47.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG06 IPAHM689 SSR 10.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG06 IPAHM689 SSR 79.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI IPAHM689 SSR 157.95 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI IPAHM689 SSR 35.7 (cM) Automated name-based, Automated name-based View Maps
Ah23_2 SSR 81 No other positions
AC3C02 SSR 82.1 peanut - BB_A.ipaensis_x_A.magna_a - BB10 AC3C02 SSR 20.519 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 GM117 SSR 58.588 (cM) Automated name-based, Automated name-based View Maps
RN0x506 SSR 84.2 No other positions
TC1G04 SSR 86.1 peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC1G04 SSR 17.41 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG05 Ah1TC1G04 SSR 19.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV TC1G04 SSR 60.972 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 TC1G04 SSR 63.05 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC1G04 SSR 32.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIV TC1G04 SSR 136.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA10 TC1G04 SSR 3.325 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB10 TC1G04 SSR 17.2 (cM) Automated name-based, Automated name-based View Maps
Ah-659 SSR 90 No other positions
Leg20MGm CAPS 100.3 No other positions
RN0x729 SSR 126.1 No other positions
Ah11 SSR 151.5 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 Ah11 SSR 41.723 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB01 Ah11 SSR 11.469 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 Ah11 SSR 230.94 (cM) Automated name-based, Automated name-based View Maps
Leg177 CAPS 173.5 No other positions
TC4C08 SSR 183 No other positions
AC2C02_2 SSR 187.3 peanut - AA_A.duranensis_x_A.stenosperma_a - A09 AC2C02_1 SSR 92 (cM) Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG3 Ah2AC2C02 SSR 60.2 (cM) Automated name-based, Automated name-based View Maps