LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_d
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A01
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_d [ View Map Set Info ]
Map Name: A01
Map Start: 0 cM
Map Stop: 86.4 cM
Features by Type:
65 SNP
24 SSR
89 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 89.       of 4 | Next
peanut - AA_A.duranensis_x_A.stenosperma_d - A01
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG902975_95 SNP 0 No other positions
DS_c1383_590 SNP 4.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP370 SNP 5.629 (cM) Automated name-based, Automated name-based View Maps
DS_c4214_1102 SNP 4.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP716 SNP 5.177 (cM) Automated name-based, Automated name-based View Maps
DS_c9263_191 SNP 4.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP1035 SNP 8.211 (cM) Automated name-based, Automated name-based View Maps
TC2E05 SSR 5.3 peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 TC2E05.B01 SSR 231.15 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG04 Ah1TC2E05 SSR 37.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 TC2E05 SSR 392.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC2E05.A01 SSR 162.91 (cM) Automated name-based, Automated name-based View Maps
DS_c1562_542 SNP 11.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP415 SNP 18.369 (cM) Automated name-based, Automated name-based View Maps
DS_c17603_90 SNP 17.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP454 SNP 23.471 (cM) Automated name-based, Automated name-based View Maps
TOG905517_157 SNP 20.3 No other positions
RN25H06 SSR 22.1 peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 RN25H06 SSR 4.705 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 RN25H06 SSR 61.488 (cM) Automated name-based, Automated name-based View Maps
DS_c13546_273 SNP 22.7 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP363 SNP 28.3 (cM) Automated name-based, Automated name-based View Maps
TOG897646 SNP 22.7 soybean - GmJGI8x - Gm11 TOG897646 TOG 26,549,647 - 26,551,929 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897646 SNP 12.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP78 SNP 28.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 3_205_TOG897646_2_116 SNP 8.61 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG897646_1 SNP 90.73 (cM) Automated name-based, Automated name-based View Maps
TOG897646_500 SNP 22.7 No other positions
DS_c5189_186 SNP 24.6 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP797 SNP 34.625 (cM) Automated name-based, Automated name-based View Maps
DS_c21594_45 SNP 25.8 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP514 SNP 37.133 (cM) Automated name-based, Automated name-based View Maps
TOG894141_355 SNP 28.1 No other positions
DS_c2443_410 SNP 28.8 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP555 SNP 40.8 (cM) Automated name-based, Automated name-based View Maps
DS_c2532_722 SNP 29.4 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP565 SNP 41.036 (cM) Automated name-based, Automated name-based View Maps
TOG897306 SNP 29.4 soybean - GmJGI8x - Gm05 TOG897306 TOG 36,819,295 - 36,823,723 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG897306 SNP 81.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897306 TOG 15,423,077 - 15,429,437 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG897306_326 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP73 SNP 38.707 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG897306 SNP 19.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG897306_418 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
RN23A07 SSR 29.4 peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 RN23A07 SSR 130.64 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 RN9A05 SSR 181.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 RN23A07 SSR 70.15 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 RN23A07 SSR 12.436 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 RN23A07 SSR 38.701 (cM) Automated name-based, Automated name-based View Maps
RN9A05 SSR 29.4 peanut - AA_A.duranensis_x_A.stenosperma_a - A01 RN9A05 SSR 181.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 RN9A05 SSR 70.477 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 RN9A05 SSR 130.64 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 RN9A05 SSR 12.541 (cM) Automated name-based, Automated name-based View Maps
Seq16G8 SSR 29.4 peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 seq16G8.A09 SSR 50.25 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 seq16G8.A01 SSR 135.24 (cM) Automated name-based, Automated name-based View Maps
TOG899506_248 SNP 30 No other positions
Leg463_1 SSR 30 No other positions
DS_c1095_330 SNP 32.6 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP271 SNP 47.129 (cM) Automated name-based, Automated name-based View Maps
DS_c11080_157 SNP 32.6 peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP278 SNP 46.723 (cM) Automated name-based, Automated name-based View Maps