LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_d
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
QTL_nematode
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_d [ View Map Set Info ]
Map Name: A05
Map Start: 0 cM
Map Stop: 138.1 cM
Features by Type:
1 QTL_nematode
78 SNP
40 SSR
119 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 119.       of 5 | Next
peanut - AA_A.duranensis_x_A.stenosperma_d - A05
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG896882_29 SNP 0 No other positions
TOG896882 SNP 0.6 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP62 SNP 112.131 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG896882_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896882 TOG 13,129,340 - 13,134,256 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896882 TOG 44,817,943 - 44,822,560 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896882 TOG 2,010,438 - 2,016,038 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG896882 TOG 39,950,643 - 39,955,501 (cM) Automated name-based, Automated name-based View Maps
DS_c11456_172 SNP 1.8 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP294 SNP 108.31 (cM) Automated name-based, Automated name-based View Maps
TOG896097_531 SNP 3.5 No other positions
Leg231 SSR 10 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 Leg231 SSR 0 (cM) Automated name-based, Automated name-based View Maps
TOG895871_280 SNP 10.7 No other positions
DS_c349_477 SNP 11.6 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP652 SNP 94.177 (cM) Automated name-based, Automated name-based View Maps
TOG898026 SNP 11.6 soybean - GmJGI8x - Gm01 TOG898026 TOG 47,611,051 - 47,630,194 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG898026 SNP 46.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG898026 TOG 11,144,986 - 11,158,213 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG898026_1 SNP 19.06 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP83 SNP 94.177 (cM) Automated name-based, Automated name-based View Maps
TOG898026_711 SNP 11.6 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP83 SNP 94.177 (cM) Automated name-based, Automated name-based View Maps
TOG896907_218 SNP 18.4 No other positions
TOG900080_84 SNP 18.4 No other positions
RGA28 SSR 20.8 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 RGA28 SSR 14.805 (cM) Automated name-based, Automated name-based View Maps
TOG895690_378 SNP 22.6 No other positions
TOG895690_687 SNP 22.6 No other positions
DS_c6795_188 SNP 23.5 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP903 SNP 82.696 (cM) Automated name-based, Automated name-based View Maps
TOG896907 SNP 24.2 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896907 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13 Ah2n_TOG896907_1 SNP 37.02 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP63 SNP 82.696 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896907 TOG 50,675,685 - 50,677,671 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG896907 TOG 6,035,952 - 6,038,872 (cM) Automated name-based, Automated name-based View Maps
TOG907321_698 SNP 28.1 No other positions
CPI02C10 SSR 28.1 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 CPI02C10 SSR 18.953 (cM) Automated name-based, Automated name-based View Maps
Leg224 SSR 28.1 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 Leg224 SSR 22.529 (cM) Automated name-based, Automated name-based View Maps
Leg175 SSR 32.9 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 Leg175 SSR 28.239 (cM) Automated name-based, Automated name-based View Maps
TOG905638 SNP 38.2 barrel medic - Mt3.0 - MtChr5 TOG905638 TOG 5,424,818 - 5,428,441 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG905638 TOG 3,679,121 - 3,681,639 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG905638 TOG 51,835,458 - 51,837,911 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG905638 SNP 8.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP171 SNP 70.772 (cM) Automated name-based, Automated name-based View Maps
TOG901225_106 SNP 39.9 No other positions
TOG898018 SNP 43.8 peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG898018_1 SNP 5.54 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG898018 TOG 7,769,141 - 7,772,409 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG898018 TOG 50,155,358 - 50,158,621 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG898018 TOG 53,355,569 - 53,356,890 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG898018 SNP 36.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP82 SNP 64.753 (cM) Automated name-based, Automated name-based View Maps
TOG898018_457 SNP 43.8 No other positions
TOG898231_169 SNP 43.8 No other positions