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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_e
(Reference Set)
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Correspondences
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Maps LG04
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_e [ View Map Set Info ]
Map Name: LG04
Map Start: 0 cM
Map Stop: 17.05 cM
Features by Type:
4 SNP
4 Total

Map Features

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Items 1 to 4 of 4.
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah2n_TOG894890_1 SNP 0 peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG894890 SNP 77.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP1068 SNP 8.406 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894890 TOG 6,621,911 - 6,623,360 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_561 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894890 SNP 28.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894890_184 SNP 143.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_038_TOG894890_1_175 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG901145_1 SNP 3.58 soybean - GmJGI8x - Gm10 TOG901145 TOG 7,594,135 - 7,601,594 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG894171_2 SNP 4.56 cowpea - VuCookUCDavis2009 - VuLG10 3_146_TOG894171_2_715 SNP 1.97 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1025 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894171 TOG 41,377,729 - 41,380,871 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894171_1067 SNP 145.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP3 SNP 12.555 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894171 SNP 70.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894171 SNP 8 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG896540_2 SNP 17.05 cowpea - VuCookUCDavis2009 - VuLG10 3_208_TOG896540_2_795 SNP 31.37 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896540 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896540 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896540 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896540 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG896540 SNP 71.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_334 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896540 TOG 23,076,499 - 23,078,083 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_239 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG896540 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP53 SNP 20.659 (cM) Automated name-based, Automated name-based View Maps