LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_e
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_e [ View Map Set Info ]
Map Name: LG08
Map Start: 0 cM
Map Stop: 50.32 cM
Features by Type:
16 SNP
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah2n_TOG902560_2 SNP 0 soybean - GmJGI8x - Gm12 TOG902560 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG902560 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG902560_464 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG902560_315 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902560 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG907934_2 SNP 0.68 common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG907934 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG907934 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG907934 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_628 SNP 52.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_284_TOG907934_2_593 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG907934 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_285 SNP 43.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_060_TOG907934_2_148 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG902140_2 SNP 0.68 common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG902140 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG902140 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG918756_1 SNP 3.99 barrel medic - Mt3.0 - MtChr2 TOG918756 TOG 26,554,589 - 26,558,436 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG918756 TOG 37,885,272 - 37,886,578 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG918756 TOG 28,012,074 - 28,013,069 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP208 SNP 49.642 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG895956_1 SNP 6.93 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895956 SNP 84.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895956 TOG 1,912,513 - 1,916,539 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG895072_2 SNP 15.35 cowpea - VuCookUCDavis2009 - VuLG07 3_233_TOG895072_2_1197 SNP 33.19 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG895072 TOG 36,937,771 - 36,940,044 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP22 SNP 45.805 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG904488_2 SNP 17.87 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP159 SNP 43.641 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG904488 TOG 8,567,669 - 8,574,341 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG904488 TOG 36,462,821 - 36,469,929 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG898978_1 SNP 18.81 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG898978 SNP 93.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG898978 TOG 38,748,403 - 38,751,567 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP94 SNP 43.065 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG898978 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG922166_2 SNP 25.26 cowpea - VuCookUCDavis2009 - VuLG08 4_164_TOG922166_2_186 SNP 61.41 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG922166_264 SNP 49.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG922166 TOG 11,097,591 - 11,101,068 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG922166 TOG 11,959,476 - 11,978,658 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG894669_2 SNP 34.72 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_956 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894669 TOG 40,309,005 - 40,311,474 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894669 TOG 13,313,892 - 13,316,401 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_269_TOG894669_2_153 SNP 29.92 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894669 TOG 13,592,273 - 13,594,547 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894669 SNP 77.9 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_429 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG902883_1 SNP 35.36 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP145 SNP 8.169 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG902883 TOG 39,751,275 - 39,753,499 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG902883_74 SNP 14.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG902883 TOG 43,710,219 - 43,714,109 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_206_TOG902883_1_507 SNP 30.58 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG902883 SNP 126.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG902883 SNP 33.8 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG895983_1 SNP 36.01 barrel medic - Mt3.0 - MtChr1 TOG895983 TOG 13,193,763 - 13,202,569 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895983_215 SNP 123.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895983 SNP 27.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG895983 TOG 49,545,281 - 49,553,460 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG895983 SNP 126.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP37 SNP 2.278 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG915278_1 SNP 37.31 soybean - GmJGI8x - Gm04 TOG915278 TOG 38,423,280 - 38,431,989 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP197 SNP 0.575 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG915278 SNP 29.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG915278 SNP 38.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG915278 SNP 126.3 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG897350_2 SNP 37.63 peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP74 SNP 0.575 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG897350 TOG 17,531,155 - 17,533,944 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG897350_593 SNP 27.2 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_245_TOG897350_2_663 SNP 21.97 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG897350 SNP 38.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG897350 SNP 29.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_240_TOG897350_2_350 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG897350 TOG 38,678,986 - 38,681,431 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG915884_2 SNP 50.32 common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG915884 SNP 33.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG915884 TOG 43,389,515 - 43,390,939 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG915884_568 SNP 16 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG915884 TOG 14,393,239 - 14,399,731 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_129_TOG915884_2_371 SNP 29.27 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG946813_1 SNP 50.32 cowpea - VuCookUCDavis2009 - VuLG01 3_084_TOG946813_1_149 SNP 28.62 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG946813 TOG 15,068,436 - 15,070,882 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG946813 SNP 51.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG946813_360 SNP 17.9 (cM) Automated name-based, Automated name-based View Maps