LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_e
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_e [ View Map Set Info ]
Map Name: LG13
Map Start: 0 cM
Map Stop: 44.05 cM
Features by Type:
8 SNP
8 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
peanut - AA_A.duranensis_x_A.stenosperma_e - LG13
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah2n_TOG896882_1 SNP 0 soybean - GmJGI8x - Gm09 TOG896882 TOG 39,950,643 - 39,955,501 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG896882 SNP 0.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896882 TOG 13,129,340 - 13,134,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896882 TOG 2,010,438 - 2,016,038 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP62 SNP 112.131 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896882 TOG 44,817,943 - 44,822,560 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG896097_2 SNP 2.41 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896097_1350 SNP 6.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG896097 TOG 1,613,178 - 1,616,011 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_087_TOG896097_2_796 SNP 32.68 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG896097 TOG 12,436,533 - 12,439,853 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG895871_2 SNP 15.99 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_189 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895871 SNP 44.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895871_254 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP35 SNP 96.512 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_197_TOG895871_2_102 SNP 29.07 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895871 TOG 12,024,357 - 12,028,281 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 4_052_TOG895871_2_164 SNP 29.07 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895871 TOG 46,733,016 - 46,735,985 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG895871 TOG 40,585,120 - 40,588,357 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895871 SNP 46.9 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG898026_1 SNP 19.06 soybean - GmJGI8x - Gm01 TOG898026 TOG 47,611,051 - 47,630,194 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG898026 SNP 11.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG898026 SNP 46.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG898026 TOG 11,144,986 - 11,158,213 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP83 SNP 94.177 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG900080_1 SNP 28.84 lotus - LjKazusa200905 - LjChr2 TOG900080 TOG 49,669,862 - 49,670,923 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_255_TOG900080_1_381 SNP 24.42 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG900080 TOG 10,234,517 - 10,238,078 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP117 SNP 88.938 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG900080 TOG 48,262,234 - 48,265,239 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG900080_139 SNP 43.2 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG895690_1 SNP 34.67 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP29 SNP 83.283 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_622 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_075_TOG895690_1_533 SNP 22.13 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895690 TOG 9,422,314 - 9,433,284 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG895690 SNP 43.6 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895690 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG895690 TOG 6,398,564 - 6,401,809 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG895690_763 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG896907_1 SNP 37.02 soybean - GmJGI8x - Gm11 TOG896907 TOG 6,035,952 - 6,038,872 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG896907 TOG 50,675,685 - 50,677,671 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP63 SNP 82.696 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896907 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG896907 SNP 24.2 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG907321_2 SNP 44.05 barrel medic - Mt3.0 - MtChr5 TOG907321 TOG 4,370,722 - 4,373,199 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG907321 TOG 5,358,013 - 5,360,464 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG907321 TOG 52,700,823 - 52,705,913 (cM) Automated name-based, Automated name-based View Maps