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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AA_A.duranensis_x_A.stenosperma_e
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps LG14
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AA_A.duranensis_x_A.stenosperma_e [ View Map Set Info ]
Map Name: LG14
Map Start: 0 cM
Map Stop: 16.31 cM
Features by Type:
4 SNP
4 Total

Map Features

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Items 1 to 4 of 4.
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah2n_TOG903757_1 SNP 0 soybean - GmJGI8x - Gm10 TOG903757 TOG 50,697,925 - 50,704,741 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP149 SNP 28.206 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG903757 TOG 32,619,568 - 32,624,313 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_341_TOG903757_1_192 SNP 77.37 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG896078_2 SNP 1.29 soybean - GmJGI8x - Gm20 TOG896078 TOG 46,467,086 - 46,471,447 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896078 SNP 90.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896078_791 SNP 212.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896078 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG896942_2 SNP 13.39 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896942_629 SNP 207.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896942 TOG 49,488,080 - 49,494,274 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896942 TOG 57,978,738 - 57,983,529 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP65 SNP 33.337 (cM) Automated name-based, Automated name-based View Maps
Ah2n_TOG935579_1 SNP 16.31 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG935579 SNP 63.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP226 SNP 36.706 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_281_TOG935579_1_1478 SNP 68.76 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG935579 TOG 34,439,347 - 34,444,040 (cM) Automated name-based, Automated name-based View Maps