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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-AhCookUCDavisRGHHyb2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps FPC_Contig56
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Clone
fpc_marker
GenomicClone_ActiveFinishing
GenomicClone_Finished
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - AhCookUCDavisRGHHyb2 [ View Map Set Info ]
Map Name: FPC_Contig56
Map Start: 0 cM
Map Stop: 1,000 cM
Features by Type:
12 Clone
6 GenomicClone_ActiveFinishing
22 GenomicClone_Finished
3 SSR
6 fpc_marker
49 Total

Map Features

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Items 1 to 25 of 49.       of 2 | Next
peanut - AhCookUCDavisRGHHyb2 - FPC_Contig56
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AR003F19 GenomicClone_Finished 560 - 636 No other positions
AR006I18 GenomicClone_ActiveFinishing 899 - 1,000 No other positions
AR009B04 Clone 99 - 201 No other positions
AR009H05 GenomicClone_Finished 560 - 658 No other positions
AR006G13_ssr SSR 542 No other positions
AR005B05 GenomicClone_Finished 498 - 578 No other positions
AR011G21 Clone 332 - 389 No other positions
AR007D21 Clone 344 - 403 No other positions
AR008C20 GenomicClone_Finished 146 - 228 No other positions
AR009G11 GenomicClone_Finished 476 - 554 No other positions
AR006G13 GenomicClone_Finished 489 - 595 No other positions
AR006A07 GenomicClone_ActiveFinishing 30 - 125 No other positions
AR005B05_ssr SSR 538 No other positions
AR007O13 GenomicClone_Finished 797 - 872 No other positions
AR011E18 GenomicClone_Finished 473 - 528 No other positions
AR008C20_ssr SSR 187 No other positions
AR005H22 GenomicClone_Finished 22 - 96 No other positions
AR005N24 Clone 797 - 861 No other positions
AR007B24 Clone 335 - 405 No other positions
AR006N21 Clone 797 - 858 No other positions
AR011N08 GenomicClone_ActiveFinishing 618 - 707 No other positions
AR008F07 GenomicClone_Finished 110 - 227 No other positions
AR009C17 GenomicClone_Finished 1 - 89 No other positions
AR006B06 GenomicClone_Finished 370 - 471 No other positions
AR007F21 Clone 882 - 949 No other positions