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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-BB_A.ipaensis_x_A.magna_a
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps BB01
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - BB_A.ipaensis_x_A.magna_a [ View Map Set Info ]
Map Name: BB01
Map Start: 0 cM
Map Stop: 31.406 cM
Features by Type:
69 SSR
1 transposon
70 Total

Map Features

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Items 1 to 25 of 70.       of 3 | Next
peanut - BB_A.ipaensis_x_A.magna_a - BB01
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS1478_b1 SSR 0 No other positions
AHGS1873 SSR 0.2 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1873 SSR 35.026 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1873 SSR 9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB01 AHGS1873 SSR 32.913 (cM) Automated name-based, Automated name-based View Maps
AHS2850_b1 SSR 1.37 No other positions
AHGS3659 SSR 2.394 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS3659 SSR 9.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS3659 SSR 33.025 (cM) Automated name-based, Automated name-based View Maps
AHGS1790_b1 SSR 2.61 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1790_b1 SSR 10 (cM) Automated name-based, Automated name-based View Maps
AHS3060 SSR 3.3 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHS3060 SSR 3.673 (cM) Automated name-based, Automated name-based View Maps
TC24D06 SSR 3.3 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 TC24D06 SSR 34.361 (cM) Automated name-based, Automated name-based View Maps
AHGS2045 SSR 3.999 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS2045 SSR 34.806 (cM) Automated name-based, Automated name-based View Maps
AHGS1403 SSR 4.598 No other positions
AHGS2739 SSR 5.675 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS2739 SSR 36.541 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS2739 SSR 12.6 (cM) Automated name-based, Automated name-based View Maps
AHS1913 SSR 6.719 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHS1913 SSR 38.135 (cM) Automated name-based, Automated name-based View Maps
AHGS1516 SSR 7.565 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1516 SSR 28.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1516 SSR 46.889 (cM) Automated name-based, Automated name-based View Maps
AHGS1182 SSR 7.943 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHGS1182 SSR 83.066 (cM) Automated name-based, Automated name-based View Maps
AHGS1826 SSR 8.123 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1826 SSR 39.442 (cM) Automated name-based, Automated name-based View Maps
AHS2541_b1 SSR 8.695 No other positions
AHGS2456 SSR 8.948 peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 AHGS2456 SSR 20.862 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS2456 SSR 0 (cM) Automated name-based, Automated name-based View Maps
AHS2850_b2 SSR 9.389 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHS2850_b2 SSR 16.3 (cM) Automated name-based, Automated name-based View Maps
Seq4A06 SSR 9.759 peanut - BB_A.ipaensis_x_A.magna_b - B01 Seq4A06 SSR 30.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 seq4A06.B01 SSR 53.29 (cM) Automated name-based, Automated name-based View Maps
Seq4D04 SSR 9.876 No other positions
AHGS1771_b1 SSR 10.121 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1771_b1 SSR 1.6 (cM) Automated name-based, Automated name-based View Maps
AHGS1459 SSR 10.213 peanut - BB_A.ipaensis_x_A.magna_b - B01 AHGS1459 SSR 17.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA01 AHGS1459 SSR 20.427 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA01 AHGS1459 SSR 44.839 (cM) Automated name-based, Automated name-based View Maps
Seq11E08 SSR 10.329 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 Seq11E08 SSR 41.354 (cM) Automated name-based, Automated name-based View Maps
AHS1688 SSR 10.458 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHS1688 SSR 41.356 (cM) Automated name-based, Automated name-based View Maps
Seq7B09 SSR 10.585 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 Seq7B09 SSR 44.419 (cM) Automated name-based, Automated name-based View Maps
AHGS1820 SSR 10.834 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B01 AHGS1820 SSR 41.523 (cM) Automated name-based, Automated name-based View Maps