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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-BB_A.ipaensis_x_A.magna_a
(Reference Set)
Min.
Correspondences
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Maps BB04
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - BB_A.ipaensis_x_A.magna_a [ View Map Set Info ]
Map Name: BB04
Map Start: 0 cM
Map Stop: 68.116 cM
Features by Type:
79 SSR
6 transposon
85 Total

Map Features

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Items 1 to 25 of 85.       of 4 | Next
peanut - BB_A.ipaensis_x_A.magna_a - BB04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS2643 SSR 0 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS2643 SSR 56.447 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS2643 SSR 39.63 (cM) Automated name-based, Automated name-based View Maps
AHS0968_b1 SSR 8.567 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHS0968_b1 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
AHGS2138 SSR 9.598 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHGS2138 SSR 51.607 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2138 SSR 27.3 (cM) Automated name-based, Automated name-based View Maps
AHS0968_b2 SSR 10.431 No other positions
AHGS1771_b2 SSR 11.904 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS1771_b2 SSR 49.3 (cM) Automated name-based, Automated name-based View Maps
Seq3B06 SSR 13.278 No other positions
AHGS2785 SSR 15.325 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS2785 SSR 61.972 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2785 SSR 31.1 (cM) Automated name-based, Automated name-based View Maps
AHS1203 SSR 16.435 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHS1203 SSR 32.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS1203 SSR 59.422 (cM) Automated name-based, Automated name-based View Maps
AHS1094 SSR 16.581 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS1094 SSR 59.35 (cM) Automated name-based, Automated name-based View Maps
AHS2111 SSR 17.023 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS2111 SSR 59.87 (cM) Automated name-based, Automated name-based View Maps
AHS2235 SSR 17.907 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS2235 SSR 60.609 (cM) Automated name-based, Automated name-based View Maps
AHS1545 SSR 17.957 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHS1545 SSR 57.765 (cM) Automated name-based, Automated name-based View Maps
AHS3078 SSR 19.424 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHS3078 SSR 38.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS3078 SSR 61.588 (cM) Automated name-based, Automated name-based View Maps
AHGS1279 SSR 20.483 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS1279 SSR 94.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS1279 SSR 56.367 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS1279 SSR 40.188 (cM) Automated name-based, Automated name-based View Maps
AHS0572 SSR 21.01 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHS0572 SSR 35.6 (cM) Automated name-based, Automated name-based View Maps
AHGS2132 SSR 21.791 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2132 SSR 40.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS2132 SSR 36.591 (cM) Automated name-based, Automated name-based View Maps
AHS1549 SSR 21.921 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHS1549 SSR 64.536 (cM) Automated name-based, Automated name-based View Maps
AHGS2373 SSR 22.283 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS2373 SSR 56.759 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2373 SSR 42.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS2373 SSR 41.314 (cM) Automated name-based, Automated name-based View Maps
AHGS1860 SSR 22.727 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS1860 SSR 84.7 (cM) Automated name-based, Automated name-based View Maps
AHGS1917 SSR 23.202 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS1917 SSR 90 (cM) Automated name-based, Automated name-based View Maps
AHGS2155 SSR 23.378 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2155 SSR 91.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS2155 SSR 42.992 (cM) Automated name-based, Automated name-based View Maps
AHGS2100 SSR 23.688 peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 AHGS2100 SSR 25.025 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2100 SSR 43.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB04 AHGS2100 SSR 13.148 (cM) Automated name-based, Automated name-based View Maps
AHGS1885 SSR 24.02 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B04 AHGS1885 SSR 72.411 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS1885 SSR 50.2 (cM) Automated name-based, Automated name-based View Maps
AHGS2220_b1 SSR 24.302 peanut - BB_A.ipaensis_x_A.magna_b - B04 AHGS2220_b1 SSR 82.7 (cM) Automated name-based, Automated name-based View Maps
AHGS1552_b2 SSR 24.86 No other positions