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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set peanut-BB_A.ipaensis_x_A.magna_a
(Reference Set)
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Correspondences
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Maps BB05
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - BB_A.ipaensis_x_A.magna_a [ View Map Set Info ]
Map Name: BB05
Map Start: 0 cM
Map Stop: 73.522 cM
Features by Type:
70 SSR
5 transposon
75 Total

Map Features

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Items 1 to 25 of 75.       of 3 | Next
peanut - BB_A.ipaensis_x_A.magna_a - BB05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AhTE0750 transposon 0 No other positions
AHGS1228 SSR 5.249 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS1228 SSR 37.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1228 SSR 35.275 (cM) Automated name-based, Automated name-based View Maps
AHS2708 SSR 6.34 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHS2708 SSR 39.315 (cM) Automated name-based, Automated name-based View Maps
AHGS1391 SSR 7.626 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1391 SSR 37.646 (cM) Automated name-based, Automated name-based View Maps
AHGS1927 SSR 8.821 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1927 SSR 55.952 (cM) Automated name-based, Automated name-based View Maps
AHGS1770 SSR 10.257 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS1770 SSR 41.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1770 SSR 40.036 (cM) Automated name-based, Automated name-based View Maps
AHGS2568 SSR 10.614 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2568 SSR 44 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2568 SSR 41.771 (cM) Automated name-based, Automated name-based View Maps
AHS0847 SSR 11.02 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHS0847 SSR 44.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHS0847 SSR 43.86 (cM) Automated name-based, Automated name-based View Maps
AhTE0710 transposon 11.291 peanut - BB_A.ipaensis_x_A.magna_b - B05 AhTE0710 transposon 14.9 (cM) Automated name-based, Automated name-based View Maps
TC6E01 SSR 11.878 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV TC6E01 SSR 174.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A05 TC6E01 SSR 100.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG05 TC6E01 SSR 9.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV TC6E01 SSR 31.343 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 TC6E01 SSR 53.65 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 TC6E01 SSR 24.142 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TC6E01 SSR 95.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV TC6E01 SSR 16.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV TC6E01 SSR 96.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 TC6E01.B05 SSR 33.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG05 TC6E01 SSR 91.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhV TC6E01 SSR 81.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 TC6E01.A05 SSR 164.23 (cM) Automated name-based, Automated name-based View Maps
AHGS2585_b2 SSR 12.153 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2585_b2 SSR 22.3 (cM) Automated name-based, Automated name-based View Maps
AHGS2513 SSR 12.653 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2513 SSR 45.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHGS2513 SSR 16.343 (cM) Automated name-based, Automated name-based View Maps
AHS2013 SSR 12.883 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHS2013 SSR 45.206 (cM) Automated name-based, Automated name-based View Maps
AHGS2326 SSR 13.259 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2326 SSR 45.417 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2326 SSR 29.7 (cM) Automated name-based, Automated name-based View Maps
AHGS2104 SSR 13.834 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2104 SSR 52.8 (cM) Automated name-based, Automated name-based View Maps
AHGS1188 SSR 14.166 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AHGS1188 SSR 22.757 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1188 SSR 45.607 (cM) Automated name-based, Automated name-based View Maps
AHGS2141 SSR 14.514 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2141 SSR 55.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2141 SSR 45.994 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AHGS2141 SSR 22.778 (cM) Automated name-based, Automated name-based View Maps
AhTE0553 transposon 14.661 No other positions
AHGS2455 SSR 14.78 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2455 SSR 50.309 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2455 SSR 58.4 (cM) Automated name-based, Automated name-based View Maps
AHS0739 SSR 14.879 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHS0739 SSR 23.753 (cM) Automated name-based, Automated name-based View Maps
AHGS2280 SSR 14.995 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS2280 SSR 48.64 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS2280 SSR 56.5 (cM) Automated name-based, Automated name-based View Maps
AHGS2056 SSR 15.143 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 AHGS2056 SSR 52.021 (cM) Automated name-based, Automated name-based View Maps
AHGS1497 SSR 15.275 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AHGS1497 SSR 33.966 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1497 SSR 56.41 (cM) Automated name-based, Automated name-based View Maps
AHGS1902 SSR 15.325 peanut - BB_A.ipaensis_x_A.magna_b - B05 AHGS1902 SSR 57.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B05 AHGS1902 SSR 53.407 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB05 AHGS1902 SSR 32.352 (cM) Automated name-based, Automated name-based View Maps
AHS0632 SSR 15.442 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 AHS0632 SSR 52.352 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B05 AHS0632 SSR 59.2 (cM) Automated name-based, Automated name-based View Maps