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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set peanut-BB_A.ipaensis_x_A.magna_b
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps B08
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_fungal
SSR
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - BB_A.ipaensis_x_A.magna_b [ View Map Set Info ]
Map Name: B08
Map Start: 0 cM
Map Stop: 79.5 cM
Features by Type:
8 QTL_fungal
30 SSR
1 transposon
39 Total

Map Features

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Items 1 to 25 of 39.       of 2 | Next
peanut - BB_A.ipaensis_x_A.magna_b - B08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah-558 SSR 0 peanut - AA_A.duranensis_x_A.stenosperma_a - A08 Ah-558 SSR 6.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 Ah-558 SSR 126.3 (cM) Automated name-based, Automated name-based View Maps
Rust, Puccinia 3-4 QTL_fungal 13 - 15 No other positions
Rust, Puccinia 3-1 QTL_fungal 16.2 - 18.2 No other positions
Rust, Puccinia 3-2 QTL_fungal 16.2 - 18.2 No other positions
Rust, Puccinia 3-3 QTL_fungal 16.2 - 18.2 No other positions
Rust, Puccinia 3-5 QTL_fungal 16.2 - 18.2 No other positions
Rust, Puccinia 3-6 QTL_fungal 16.2 - 18.2 No other positions
Rust, Puccinia 3-7 QTL_fungal 16.2 - 18.2 No other positions
Ah280 SSR 17.6 No other positions
Rust, Puccinia 3-8 QTL_fungal 19.2 - 21.2 No other positions
AHS2541_b2 SSR 29.3 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHS2541_b2 SSR 24.776 (cM) Automated name-based, Automated name-based View Maps
AHGS1350_b2 SSR 34.6 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS1350_b2 SSR 23.203 (cM) Automated name-based, Automated name-based View Maps
AHS2194 SSR 40.3 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHS2194 SSR 78.31 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHS2194 SSR 29.407 (cM) Automated name-based, Automated name-based View Maps
gi-716 SSR 40.3 peanut - TT_AhConsensus_GautamiFonceka2012_a - A08 gi-716 SSR 49.53 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A08 gi-716 SSR 0 (cM) Automated name-based, Automated name-based View Maps
AHGS3171 SSR 41.5 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS3171 SSR 28.261 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA03 AHGS3171 SSR 4.573 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA08 AHGS3171 SSR 85.793 (cM) Automated name-based, Automated name-based View Maps
Seq3A05 SSR 44.5 peanut - BB_A.ipaensis_x_A.magna_a - BB08 Seq3A05 SSR 24.282 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 Seq3A05 SSR 69.115 (cM) Automated name-based, Automated name-based View Maps
AHS2770 SSR 45.4 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHS2770 SSR 22.243 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHS2770 SSR 66.77 (cM) Automated name-based, Automated name-based View Maps
AHGS2695_b2 SSR 47.2 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS2695_b2 SSR 20.063 (cM) Automated name-based, Automated name-based View Maps
AHGS1553 SSR 47.7 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS1553 SSR 19.769 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHGS1553 SSR 63.55 (cM) Automated name-based, Automated name-based View Maps
AHGS2619 SSR 49.3 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS2619 SSR 16.415 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHGS2619 SSR 65.112 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB08 AHGS2619 SSR 28.903 (cM) Automated name-based, Automated name-based View Maps
AHGS0238 SSR 50.9 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB08 AHGS0238 SSR 26.629 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHGS0238 SSR 63.84 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS0238 SSR 19.208 (cM) Automated name-based, Automated name-based View Maps
AHGS1980_b3 SSR 52 peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS1980_b3 SSR 19.077 (cM) Automated name-based, Automated name-based View Maps
Ah1 SSR 52.6 peanut - TT_AhConsensus_GautamiFonceka2012_a - B08 Ah1 SSR 69.97 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 Ah1 SSR 63.155 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB08 Ah1 SSR 19.333 (cM) Automated name-based, Automated name-based View Maps
Seq2A06 SSR 53.2 peanut - BB_A.ipaensis_x_A.magna_a - BB08 Seq2A06 SSR 18.785 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B08 seq2A06.B08 SSR 103.66 (cM) Automated name-based, Automated name-based View Maps
AHGS2571 SSR 55 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B08 AHGS2571 SSR 56.33 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB08 AHGS2571 SSR 15.906 (cM) Automated name-based, Automated name-based View Maps