LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr4
Map Start: 0 cM
Map Stop: 159.7 cM
Features by Type:
71 SNP
71 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 71.       of 3 | Next
chickpea - CaCookUCDavis2009 - CaChr4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG908625 SNP 0 cowpea - VuCookUCDavis2009 - VuLG02 3_113_TOG908625_1_236 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG908625 TOG 41,361,940 - 41,371,806 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG908625 TOG 18,404,335 - 18,411,826 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG908625 TOG 46,686,382 - 46,695,932 (cM) Automated name-based, Automated name-based View Maps
AGL7_105 SNP 2.9 No other positions
AGL93_229 SNP 3.3 No other positions
Ca_TOG916452 SNP 3.7 peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP205 SNP 64.054 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG916452_489 SNP 11.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG916452 SNP 45.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG916452_1 SNP 9.13 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG916452 TOG 8,386,721 - 8,388,485 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG916452 TOG 20,814,404 - 20,816,609 (cM) Automated name-based, Automated name-based View Maps
LG73_180 SNP 4.1 No other positions
Ca_TOG897973 SNP 4.1 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG897973_2 SNP 25.81 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG897973 TOG 20,791,840 - 20,794,841 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG897973_313 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG897973 TOG 32,057,870 - 32,061,938 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG897973 TOG 593,945 - 596,009 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG907144 SNP 6.5 lotus - LjKazusa200905 - LjChr3 TOG907144 TOG 83,749,301 - 83,756,671 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG907144 TOG 2,851,306 - 2,860,743 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG907144 SNP 20.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG907144 TOG 20,328,868 - 20,337,458 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP178 SNP 38.047 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894248 SNP 15.8 soybean - GmJGI8x - Gm11 TOG894248 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894248 TOG 3,183,824 - 3,186,891 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894248 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894248 TOG 19,863,169 - 19,866,796 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894248 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894248 TOG 965,441 - 966,026 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894248 TOG 41,748,010 - 41,752,807 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG917794 SNP 15.8 soybean - GmJGI8x - Gm12 TOG917794 TOG 3,183,824 - 3,186,891 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_318_TOG917794_1_597 SNP 70.36 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG917794 TOG 19,863,169 - 19,866,796 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG917794_783 SNP 13.4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG917794 TOG 53,049,234 - 53,052,140 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG917794 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG917794 TOG 41,748,039 - 41,752,463 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG917794 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900222 SNP 19.6 common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG900222 SNP 26.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG900222 TOG 19,439,131 - 19,442,081 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG900222 TOG 80,886,883 - 80,890,520 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG900222 TOG 9,458,343 - 9,461,963 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_348_TOG900222_2_388 SNP 17.48 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG900222 TOG 3,542,397 - 3,545,820 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG946804 SNP 19.6 soybean - GmJGI8x - Gm12 TOG946804 TOG 3,538,654 - 3,540,762 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP231 SNP 35.369 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG946804 TOG 80,891,672 - 80,894,467 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG946804_328 SNP 14 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_203_TOG946804_1_338 SNP 43.37 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899657 SNP 24.3 cowpea - VuCookUCDavis2009 - VuLG07 3_310_TOG899657_2_662 SNP 9.26 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG899657 TOG 41,705,538 - 41,707,329 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG899657 SNP 12.5 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899728 SNP 25.1 soybean - GmJGI8x - Gm11 TOG899728 TOG 10,323,367 - 10,324,469 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG899728 TOG 78,340,693 - 78,342,677 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG899728 TOG 4,332,717 - 4,334,539 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG899728 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP113 SNP 31.413 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG899728_1 SNP 11.39 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG922092 SNP 26.7 soybean - GmJGI8x - Gm13 TOG922092 TOG 41,377,034 - 41,380,152 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG922092 TOG 3,149,936 - 3,154,277 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG922092 TOG 15,397,382 - 15,401,193 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG922092 SNP 15.7 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896103 SNP 26.7 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG896103_1 SNP 5.14 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG896103 TOG 41,377,034 - 41,380,152 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG896103 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG896103 TOG 3,149,936 - 3,154,277 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG896103 TOG 15,397,382 - 15,401,193 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG896103 SNP 15.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG896103 TOG 4,766,800 - 4,771,359 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG906599 SNP 26.7 soybean - GmJGI8x - Gm11 TOG906599 TOG 10,888,185 - 10,890,316 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906599 TOG 16,486,834 - 16,488,982 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG906599_750 SNP 16.5 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG906599 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895029 SNP 26.7 soybean - GmJGI8x - Gm13 TOG895029 TOG 41,316,481 - 41,320,023 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901904 SNP 28.7 common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG901904 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG901904 TOG 11,103,154 - 11,107,035 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG901904 TOG 15,904,073 - 15,908,094 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_286_TOG901904_2_414 SNP 77.92 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894415 SNP 29.9 soybean - GmJGI8x - Gm11 TOG894415 TOG 11,352,021 - 11,354,483 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894415_92 SNP 18.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_141_TOG894415_2_119 SNP 24.41 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP12 SNP 51.441 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG894415 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894415 TOG 5,387,881 - 5,390,486 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894415 TOG 16,345,787 - 16,348,452 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894415_211 SNP 18.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG909974 SNP 30.3 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG909974_86 SNP 18.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG909974 TOG 5,197,880 - 5,206,883 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG909974 TOG 16,684,643 - 16,693,779 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG909974 TOG 11,566,275 - 11,571,132 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894314 SNP 30.7 soybean - GmJGI8x - Gm11 TOG894314 TOG 16,999,262 - 17,002,550 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894314_126 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_376_TOG894314_1_1271 SNP 27.36 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG894314 SNP 39.7 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894314_563 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894314 TOG 6,058,543 - 6,062,029 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894314 TOG 75,245,698 - 75,248,870 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_245_TOG894314_1_1026 SNP 27.36 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG919211 SNP 30.7 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG919211_178 SNP 22.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG919211 TOG 16,763,495 - 16,766,859 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903717 SNP 30.7 soybean - GmJGI8x - Gm11 TOG903717 TOG 17,275,016 - 17,277,788 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894408 SNP 31.5 cowpea - VuCookUCDavis2009 - VuLG04 3_197_TOG894408_1_735 SNP 29 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894408 TOG 6,254,426 - 6,256,701 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894408 TOG 20,893,774 - 20,900,512 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899538 SNP 32.3 soybean - GmJGI8x - Gm11 TOG899538 TOG 15,398,657 - 15,402,782 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG899538_91 SNP 28.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG899538 TOG 73,585,005 - 73,588,519 (cM) Automated name-based, Automated name-based View Maps