LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr1
Map Start: 0 cM
Map Stop: 113.9 cM
Features by Type:
85 SNP
85 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 85.       Previous | of 4 | Next
chickpea - CaCookUCDavis2009 - CaChr1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG908504 SNP 69.3 soybean - GmJGI8x - Gm13 TOG908504 TOG 23,300,939 - 23,304,906 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG908504_1 SNP 5.62 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899516 SNP 68.9 cowpea - VuCookUCDavis2009 - VuLG10 4_110_TOG899516_2_114 SNP 76.06 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG899516 TOG 32,430,094 - 32,433,237 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG899516 TOG 50,562,469 - 50,565,263 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP102 SNP 13.758 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_054_TOG899516_1_270 SNP 76.06 (cM) Automated name-based, Automated name-based View Maps
tk_515 SNP 68.9 No other positions
Ca_TOG901045 SNP 68.9 soybean - GmJGI8x - Gm20 TOG901045 TOG 46,673,187 - 46,674,099 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG901045 SNP 92.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896733 SNP 68.9 soybean - GmJGI8x - Gm20 TOG896733 TOG 46,467,086 - 46,471,447 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896733_248 SNP 212.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896733 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902016 SNP 68.9 soybean - GmJGI8x - Gm20 TOG902016 TOG 46,615,596 - 46,617,446 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG902016 TOG 32,714,249 - 32,717,808 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG902016 SNP 92.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP138 SNP 30.891 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG902016_49 SNP 212.9 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG935579 SNP 63.6 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP226 SNP 36.706 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_281_TOG935579_1_1478 SNP 68.76 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG935579 TOG 34,439,347 - 34,444,040 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14 Ah2n_TOG935579_1 SNP 16.31 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG922957 SNP 63.6 lotus - LjKazusa200905 - LjChr2 TOG922957 TOG 30,173,788 - 30,181,632 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG922957 TOG 25,147,664 - 25,157,049 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP218 SNP 36.706 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899078 SNP 63.6 soybean - GmJGI8x - Gm20 TOG899078 TOG 34,492,182 - 34,496,228 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG899078_731 SNP 64.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG899078 TOG 49,202,928 - 49,206,926 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899078 TOG 30,173,788 - 30,181,566 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG899078 TOG 25,147,664 - 25,157,049 (cM) Automated name-based, Automated name-based View Maps
Ca12863169747399_543 SNP 61.6 No other positions
Ca_TOG910718 SNP 60.4 cowpea - VuCookUCDavis2009 - VuLG10 3_317_TOG910718_1_179 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG910718_241 SNP 200.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_062_TOG910718_1_471 SNP 65.81 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG910718 TOG 30,111,910 - 30,117,359 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG910718 TOG 55,467,662 - 55,482,278 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG910718 TOG 47,804,829 - 47,809,376 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG910718_1 SNP 99.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG910718 SNP 70 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901985 SNP 59.2 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG901985 SNP 67.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG901985 TOG 55,129,210 - 55,131,485 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG901985 TOG 47,385,114 - 47,387,352 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897715 SNP 58 cowpea - VuCookUCDavis2009 - VuLG10 3_083_TOG897715_2_1046 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG897715 SNP 65.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG897715_421 SNP 192.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG897715_743 SNP 192.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG897715 TOG 46,634,955 - 46,637,464 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_017_TOG897715_2_290 SNP 62.49 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895578 SNP 57.6 soybean - GmJGI8x - Gm10 TOG895578 TOG 46,202,370 - 46,206,618 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_132_TOG895578_1_214 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895578 TOG 34,696,090 - 34,698,513 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP28 SNP 49.943 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A09 TOG895578 SNP 33.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895578_782 SNP 191.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_363_TOG895578_1_79 SNP 60.49 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895578 SNP 62.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895578_769 SNP 191.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895578 TOG 28,907,215 - 28,911,751 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896007 SNP 56 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896007_521 SNP 190.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_267_TOG896007_1_1311 SNP 58.53 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896007 TOG 28,429,937 - 28,433,984 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896007_1 SNP 89.84 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP38 SNP 51.507 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG896007 TOG 38,737,434 - 38,741,341 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903593 SNP 55.6 barrel medic - Mt3.0 - MtChr1 TOG903593 TOG 28,209,910 - 28,211,449 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG903593 TOG 32,709,006 - 32,711,222 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG903593 TOG 33,472,602 - 33,474,897 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG903593 TOG 38,913,450 - 38,915,168 (cM) Automated name-based, Automated name-based View Maps
LG99_250 SNP 53.5 No other positions
Ct6875951_103 SNP 53.1 No other positions
Ca_TOG919735 SNP 51.1 barrel medic - Mt3.0 - MtChr1 TOG919735 TOG 25,908,798 - 25,909,940 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG919735 TOG 40,859,749 - 40,862,249 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895535 SNP 50.7 barrel medic - Mt3.0 - MtChr1 TOG895535 TOG 26,730,998 - 26,734,562 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_176_TOG895535_2_219 SNP 54.55 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG895535 TOG 40,401,354 - 40,405,078 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895535 TOG 3,945,776 - 3,948,079 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895535 SNP 55.9 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900006 SNP 40.7 barrel medic - Mt3.0 - MtChr1 TOG900006 TOG 23,527,969 - 23,533,539 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG900006 TOG 39,615,190 - 39,618,228 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG900006_305 SNP 160.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG900006 TOG 1,996,411 - 2,001,326 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG900006 TOG 15,338,053 - 15,342,948 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG900006 SNP 49.4 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896540 SNP 39.9 cowpea - VuCookUCDavis2009 - VuLG10 3_208_TOG896540_2_795 SNP 31.37 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP53 SNP 20.659 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_239 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG04 Ah2n_TOG896540_2 SNP 17.05 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896540 TOG 23,076,499 - 23,078,083 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896540_334 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896540 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896540 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896540 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG896540 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG896540 SNP 71.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901549 SNP 39.9 soybean - GmJGI8x - Gm02 TOG901549 TOG 1,538,670 - 1,539,877 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG901549 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG901549 TOG 1,586,538 - 1,588,516 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG901549 TOG 39,389,255 - 39,390,737 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG901549 TOG 23,076,673 - 23,078,057 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG901549_244 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_048_TOG901549_1_553 SNP 31.37 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG919460 SNP 38.3 soybean - GmJGI8x - Gm02 TOG919460 TOG 1,276,418 - 1,280,086 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG919460_682 SNP 160.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG919460 TOG 22,582,673 - 22,585,957 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG919460 SNP 35.6 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903969 SNP 38.3 cowpea - VuCookUCDavis2009 - VuLG10 3_312_TOG903969_1_344 SNP 34.33 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG903969 TOG 1,195,840 - 1,197,236 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG903969 TOG 22,371,993 - 22,374,141 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP154 SNP 59.511 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG903969 TOG 37,110,708 - 37,112,805 (cM) Automated name-based, Automated name-based View Maps