LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr3
Map Start: 0 cM
Map Stop: 152.1 cM
Features by Type:
73 SNP
73 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 73.       Previous | of 3 | Next
chickpea - CaCookUCDavis2009 - CaChr3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG897884 SNP 86.1 cowpea - VuCookUCDavis2009 - VuLG01 3_020_TOG897884_1_157 SNP 47.36 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG897884 TOG 7,585,271 - 7,586,559 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP81 SNP 67.25 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG897884 TOG 39,083,363 - 39,086,568 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG897884_686 SNP 53.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG19 Ah2n_TOG897884_1 SNP 21.2 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894669 SNP 77.9 cowpea - VuCookUCDavis2009 - VuLG01 3_269_TOG894669_2_153 SNP 29.92 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894669 TOG 13,592,273 - 13,594,547 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_956 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894669 TOG 40,309,005 - 40,311,474 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894669 TOG 13,313,892 - 13,316,401 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894669_429 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG894669_2 SNP 34.72 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902476 SNP 77.9 lotus - LjKazusa200905 - LjChr1 TOG902476 TOG 13,592,273 - 13,594,547 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG902476 TOG 40,309,005 - 40,311,474 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG902476_248 SNP 10.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG902476 TOG 13,313,892 - 13,316,401 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_001_TOG902476_1_724 SNP 29.92 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895630 SNP 75 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895630_259 SNP 9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG895630 TOG 12,974,208 - 12,976,903 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903813 SNP 74.2 soybean - GmJGI8x - Gm06 TOG903813 TOG 12,879,953 - 12,883,307 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG903813 TOG 36,627,550 - 36,630,429 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903928 SNP 72.2 peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG903928_2 SNP 14.06 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG903928 TOG 45,561,178 - 45,564,666 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG903928 SNP 37 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG903928 TOG 10,877,739 - 10,880,432 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG903928 TOG 37,261,061 - 37,262,701 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900987 SNP 71 common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG900987 SNP 37 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG900987 TOG 46,116,706 - 46,117,833 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898508 SNP 69.4 cowpea - VuCookUCDavis2009 - VuLG01 4_142_TOG898508_1_366 SNP 38.15 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG19 Ah2n_TOG898508_1 SNP 44.83 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG898508 TOG 10,691,364 - 10,729,434 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903939 SNP 65.2 barrel medic - Mt3.0 - MtChr3 TOG903939 TOG 31,396,284 - 31,402,200 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG903939 TOG 7,637,774 - 7,643,739 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG903939 TOG 10,467,003 - 10,472,876 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_055_TOG903939_1_516 SNP 38.8 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG913047 SNP 62.3 soybean - GmJGI8x - Gm06 TOG913047 TOG 9,880,448 - 9,882,071 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG913047 SNP 38.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG913047_449 SNP 39.9 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG917719 SNP 61.5 soybean - GmJGI8x - Gm06 TOG917719 TOG 9,334,427 - 9,341,753 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG917719_772 SNP 42.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG917719 TOG 24,060,669 - 24,068,690 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG906843 SNP 60.3 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG906843 SNP 11 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG906843_110 SNP 2.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG906843 TOG 25,222,137 - 25,224,865 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG906843_1 SNP 21.43 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG906843 TOG 794,193 - 797,041 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899130 SNP 59.1 barrel medic - Mt3.0 - MtChr3 TOG899130 TOG 25,827,125 - 25,828,066 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG899130 TOG 51,963,091 - 51,967,190 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG899130 TOG 38,175,080 - 38,175,990 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_210_TOG899130_2_246 SNP 1.64 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG899130 TOG 36,927,455 - 36,930,305 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG899130 SNP 4.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG918150 SNP 57.5 barrel medic - Mt3.0 - MtChr3 TOG918150 TOG 26,647,063 - 26,651,374 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG918150 TOG 16,697,827 - 16,702,125 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895545 SNP 57.5 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895545_510 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG895545_1 SNP 27.32 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_260_TOG895545_1_309 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895545 TOG 18,634,224 - 18,637,075 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895545 TOG 43,941,944 - 43,944,913 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895545_184 SNP 0 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895545 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895545 TOG 26,482,881 - 26,484,614 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902462 SNP 57.1 barrel medic - Mt3.0 - MtChr3 TOG902462 TOG 27,331,823 - 27,336,270 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG902462 TOG 12,400,735 - 12,410,641 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 3_102_TOG902462_2_196 SNP 0 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG902462_158 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896744 SNP 57.1 cowpea - VuCookUCDavis2009 - VuLG10 3_085_TOG896744_1_618 SNP 15.21 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896744 TOG 26,800,519 - 26,803,360 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG896744 TOG 27,415,846 - 27,418,369 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP59 SNP 9.208 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG896744 TOG 12,017,757 - 12,020,131 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895816 SNP 57.1 soybean - GmJGI8x - Gm14 TOG895816 TOG 721,713 - 725,517 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895816_869 SNP 69.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895816 TOG 27,119,297 - 27,123,183 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895816 TOG 42,003,833 - 42,007,575 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895816 TOG 79,382,958 - 79,385,569 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP33 SNP 19.191 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG910676 SNP 57.1 common bean - PvCookUCDavis2009 - PvLG09 Pv_TOG910676 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG910676 TOG 1,453,430 - 1,456,447 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG910676_120 SNP 108.5 (cM) Automated name-based, Automated name-based View Maps
Mt133126_90 SNP 51.9 No other positions
Tp6857294_66 SNP 51.9 No other positions
Ca_TOG903716 SNP 42.5 pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG903716_717 SNP 58.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG903716_1 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG903716 TOG 12,028,402 - 12,053,771 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903808 SNP 42.1 barrel medic - Mt3.0 - MtChr3 TOG903808 TOG 2,250,262 - 2,258,328 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_138_TOG903808_2_673 SNP 67.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG903808 TOG 49,127,834 - 49,134,798 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG895467 SNP 41.7 peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG895467_1 SNP 1.28 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895467 TOG 44,369,820 - 44,376,147 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 TOG895467 SNP 131.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP26 SNP 0.583 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG895467 TOG 50,383,404 - 50,391,014 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895467 TOG 3,342,446 - 3,347,932 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG912629 SNP 41.7 barrel medic - Mt3.0 - MtChr3 TOG912629 TOG 2,438,042 - 2,443,692 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG912629 TOG 49,073,234 - 49,079,993 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG912629_354 SNP 60.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG11 Ah2n_TOG912629_2 SNP 2.28 (cM) Automated name-based, Automated name-based View Maps