LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr4
Map Start: 0 cM
Map Stop: 159.7 cM
Features by Type:
71 SNP
71 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 71.       Previous | of 3 | Next
chickpea - CaCookUCDavis2009 - CaChr4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG900871 SNP 32.3 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP125 SNP 9.267 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG900871 TOG 74,423,404 - 74,426,487 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG900871 TOG 7,137,551 - 7,141,025 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG900871 TOG 15,752,597 - 15,755,543 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG900871 TOG 13,446,527 - 13,450,452 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG900871 SNP 0 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902919 SNP 32.3 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG902919_255 SNP 26.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG902919 TOG 6,978,081 - 6,981,272 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898533 SNP 32.7 cowpea - VuCookUCDavis2009 - VuLG04 4_125_TOG898533_1_351 SNP 32.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG898533 TOG 7,596,645 - 7,598,206 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG898533 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899640 SNP 33.5 soybean - GmJGI8x - Gm13 TOG899640 TOG 39,483,019 - 39,491,754 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG899640 TOG 12,816,465 - 12,824,316 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG899640 TOG 8,043,398 - 8,050,440 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899062 SNP 33.5 barrel medic - Mt3.0 - MtChr2 TOG899062 TOG 24,736,588 - 24,738,758 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG899062 TOG 2,239,515 - 2,243,741 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG06 3_221_TOG899062_2_98 SNP 47.84 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG899062 TOG 10,567,794 - 10,571,751 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897351 SNP 34.3 soybean - GmJGI8x - Gm01 TOG897351 TOG 31,911,836 - 31,920,270 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_380_TOG897351_2_76 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG897351_290 SNP 69.6 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG916065 SNP 34.3 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG916065_206 SNP 48 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG916065 SNP 61.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG916065 TOG 17,891,833 - 17,893,786 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG916065 TOG 6,652,991 - 6,654,869 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902901 SNP 34.3 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG902901_2 SNP 43.87 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG902901 TOG 10,645,484 - 10,649,446 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG902901 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG902901 TOG 10,244,489 - 10,247,887 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG902901 TOG 47,900,558 - 47,905,663 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902834 SNP 34.3 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902834 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG902834 TOG 16,598,855 - 16,600,955 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG902834_914 SNP 9.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_344_TOG902834_1_66 SNP 7.99 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903023 SNP 34.3 soybean - GmJGI8x - Gm08 TOG903023 TOG 20,408,188 - 20,412,587 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG903023 TOG 8,344,102 - 8,349,485 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG903023 TOG 67,703 - 71,158 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894921 SNP 34.3 soybean - GmJGI8x - Gm12 TOG894921 TOG 549,186 - 552,353 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894921 TOG 42,122,057 - 42,123,580 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903841 SNP 34.3 soybean - GmJGI8x - Gm12 TOG903841 TOG 1,112,543 - 1,116,103 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG903841_1 SNP 42.58 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_237_TOG903841_1_277 SNP 5.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG903841 SNP 9.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG903841 TOG 8,348,318 - 8,352,280 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898034 SNP 34.3 barrel medic - Mt3.0 - MtChr4 TOG898034 TOG 2,198,847 - 2,204,634 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG898034 TOG 37,299,528 - 37,304,844 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG914910 SNP 34.3 soybean - GmJGI8x - Gm01 TOG914910 TOG 32,867,176 - 32,870,531 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG914910 TOG 3,753,609 - 3,758,320 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG914910_2 SNP 19.22 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG898370 SNP 34.3 cowpea - VuCookUCDavis2009 - VuLG07 3_265_TOG898370_1_263 SNP 3.98 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG898370 TOG 49,954,337 - 49,959,195 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG898370 TOG 981,054 - 987,709 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG898370_489 SNP 3.9 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897956 SNP 34.3 peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG897956_2 SNP 20.72 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG897956 TOG 573,995 - 577,679 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG897956_590 SNP 1.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG897956 SNP 39.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG908356 SNP 34.7 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG908356 SNP 7.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG908356 TOG 18,115,419 - 18,123,162 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG908356 TOG 36,372,932 - 36,378,918 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG914210 SNP 35.5 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG914210_1 SNP 31.36 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG914210 TOG 2,476,135 - 2,477,388 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG914210 TOG 21,239,552 - 21,241,883 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG914210 SNP 33.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP194 SNP 40.243 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG914210_85 SNP 10.2 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897362 SNP 36.3 cowpea - VuCookUCDavis2009 - VuLG04 3_352_TOG897362_2_292 SNP 11.26 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG897362_417 SNP 8.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG897362 TOG 21,988,369 - 21,993,023 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_335_TOG897362_2_134 SNP 11.26 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG897362 SNP 1.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG897362 TOG 7,808,251 - 7,811,256 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG897362_788 SNP 8.9 (cM) Automated name-based, Automated name-based View Maps
Pc1722835_271 SNP 36.3 No other positions
Ca_TOG900075 SNP 60 barrel medic - Mt3.0 - MtChr4 TOG900075 TOG 25,223,936 - 25,230,526 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG900075_331 SNP 59.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG900075 TOG 45,340,279 - 45,349,577 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG900075 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG907934 SNP 60.4 common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG907934 SNP 42.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG907934 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG907934 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_628 SNP 52.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_284_TOG907934_2_593 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG907934_2 SNP 0.68 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_285 SNP 43.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_060_TOG907934_2_148 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG902560 SNP 60.4 soybean - GmJGI8x - Gm12 TOG902560 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG902560_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG902560 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG902560_464 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG902560_315 SNP 26.6 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901197 SNP 60.4 lotus - LjKazusa200905 - LjChr3 TOG901197 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG901197 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_068_TOG901197_1_676 SNP 42.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901133 SNP 61.6 cowpea - VuCookUCDavis2009 - VuLG03 3_106_TOG901133_1_448 SNP 61.33 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG901133 TOG 19,515,691 - 19,521,356 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG901133 TOG 10,964,106 - 10,967,395 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG901133_1 SNP 130.9 (cM) Automated name-based, Automated name-based View Maps