LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set chickpea-CaCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CaChr8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: chickpea - CaCookUCDavis2009 [ View Map Set Info ]
Map Name: CaChr8
Map Start: 0 cM
Map Stop: 84.5 cM
Features by Type:
27 SNP
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
chickpea - CaCookUCDavis2009 - CaChr8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ca_TOG903911 SNP 10.1 soybean - GmJGI8x - Gm07 TOG903911 TOG 3,518,639 - 3,520,742 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG903911_181 SNP 23.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG903911 TOG 5,354,626 - 5,357,704 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP152 SNP 95.937 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG20 Ah2n_TOG903911_1 SNP 0.98 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG903911 TOG 26,307,473 - 26,309,234 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG903911 TOG 962,618 - 965,440 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG897306 SNP 19.5 soybean - GmJGI8x - Gm05 TOG897306 TOG 36,819,295 - 36,823,723 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG897306 SNP 81.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897306 TOG 15,423,077 - 15,429,437 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG897306_326 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TOG897306 SNP 29.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP73 SNP 38.707 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG897306_418 SNP 51.8 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG916106 SNP 19.9 soybean - GmJGI8x - Gm18 TOG916106 TOG 18,821,913 - 18,895,926 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG916106 SNP 20.9 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG916106_2 SNP 114.35 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG916106_407 SNP 97.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_297_TOG916106_2_152 SNP 60.67 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP204 SNP 101.926 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG916106 TOG 14,485,813 - 14,490,645 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG927781 SNP 19.9 barrel medic - Mt3.0 - MtChr7 TOG927781 TOG 1,746,464 - 1,748,575 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG927781 TOG 42,940,281 - 42,942,646 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG908917 SNP 19.9 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG908917_1296 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG908917 TOG 41,925,065 - 41,925,952 (cM) Automated name-based, Automated name-based View Maps
AGL178_91 SNP 25.4 No other positions
Ca_TOG897618 SNP 27.4 common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG897618 SNP 76.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897618 TOG 18,664,088 - 18,665,203 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897618 TOG 9,351,042 - 9,357,105 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG897618 TOG 48,903,666 - 48,909,604 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG897618 TOG 26,011,644 - 26,025,783 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894885 SNP 30.7 pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894885_218 SNP 17.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894885_51 SNP 17.2 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894885 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894885 TOG 30,012,063 - 30,014,494 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894885 TOG 4,582,085 - 4,583,602 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894885 TOG 17,573,101 - 17,575,310 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_314_TOG894885_1_205 SNP 47.06 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG908268 SNP 35.4 lotus - LjKazusa200905 - LjChr0 TOG908268 TOG 2,056,070 - 2,067,570 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG908268 TOG 25,853,047 - 25,865,937 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG900261 SNP 36.6 common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG900261 SNP 60.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG900261 TOG 22,725,087 - 22,727,240 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG900261_213 SNP 10.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG900261 TOG 29,436,640 - 29,439,135 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG900261_1 SNP 67.83 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG905443 SNP 36.6 lotus - LjKazusa200905 - LjChr4 TOG905443 TOG 23,144,849 - 23,147,195 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG905443 TOG 5,703,413 - 5,706,643 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG905443 TOG 22,892,185 - 22,894,794 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG905443_475 SNP 63.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG905443 SNP 60.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG899683 SNP 37 soybean - GmJGI8x - Gm05 TOG899683 TOG 5,591,303 - 5,596,477 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG899683 TOG 23,961,982 - 23,966,493 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896040 SNP 49.6 soybean - GmJGI8x - Gm17 TOG896040 TOG 11,694,163 - 11,696,705 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG896040 TOG 23,536,274 - 23,541,173 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG896040 TOG 3,658,823 - 3,661,551 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG918556 SNP 50.4 soybean - GmJGI8x - Gm05 TOG918556 TOG 4,142,048 - 4,148,665 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG918556 TOG 53,057,232 - 53,060,561 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG918556 TOG 9,621,361 - 9,627,880 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG918556 SNP 56.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG918556_321 SNP 66.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG918556 TOG 3,871,201 - 3,873,679 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG896873 SNP 55.5 barrel medic - Mt3.0 - MtChr8 TOG896873 TOG 29,342,563 - 29,349,893 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG896873 TOG 1,591,230 - 1,594,508 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG896873 SNP 51.3 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG901547 SNP 55.9 soybean - GmJGI8x - Gm17 TOG901547 TOG 7,406,783 - 7,413,422 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG901547_399 SNP 75.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG901547 TOG 29,206,321 - 29,212,060 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG901547 SNP 49.7 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG901547_429 SNP 75.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG901547_2 SNP 66.24 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_079_TOG901547_2_763 SNP 29.67 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG905278 SNP 55.9 soybean - GmJGI8x - Gm17 TOG905278 TOG 7,428,389 - 7,430,651 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG905278 TOG 29,192,313 - 29,196,136 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG894196 SNP 69.7 common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894196 SNP 41.2 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_088_TOG894196_2_558 SNP 20.42 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894196 TOG 36,702,804 - 36,764,098 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894196 TOG 28,432,757 - 28,437,579 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894196 TOG 26,626,673 - 26,628,881 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894196 TOG 17,382,502 - 17,384,816 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG903027 SNP 73 soybean - GmJGI8x - Gm06 TOG903027 TOG 13,744,195 - 13,747,033 (cM) Automated name-based, Automated name-based View Maps
AGL163_27 SNP 76.8 No other positions
Ca_TOG914635 SNP 77.6 soybean - GmJGI8x - Gm09 TOG914635 TOG 5,501,630 - 5,503,978 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_301_TOG914635_2_853 SNP 15.19 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG914635_438 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG914635 TOG 30,767,403 - 30,770,068 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG914635 TOG 39,705,563 - 39,726,516 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG946834 SNP 80.5 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG946834_218 SNP 91.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG946834 TOG 1,043,657 - 1,048,106 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP232 SNP 54.515 (cM) Automated name-based, Automated name-based View Maps
TC87800_51 SNP 80.5 No other positions
Ca_TOG902760 SNP 80.5 soybean - GmJGI8x - Gm02 TOG902760 TOG 42,328,814 - 42,330,680 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG902760 TOG 34,961,790 - 34,965,420 (cM) Automated name-based, Automated name-based View Maps
Ca_TOG905371 SNP 80.9 cowpea - VuCookUCDavis2009 - VuLG03 3_115_TOG905371_2_246 SNP 19.44 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG905371 SNP 39.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG905371 TOG 35,200,561 - 35,202,413 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG905371 TOG 42,107,369 - 42,109,186 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG905371 TOG 38,049,335 - 38,050,382 (cM) Automated name-based, Automated name-based View Maps