LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG02
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG02
Map Start: 0 cM
Map Stop: 108.5 cM
Features by Type:
54 SNP
54 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 54.       of 3 | Next
pigeonpea - CcCookUCDavis2009 - CcLG02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG897466_395 SNP 0 cowpea - VuCookUCDavis2009 - VuLG02 3_379_TOG897466_1_640 SNP 0 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG897466 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897466 TOG 18,253,140 - 18,256,915 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG947093_214 SNP 3.8 soybean - GmJGI8x - Gm08 TOG947093 TOG 17,848,921 - 17,851,229 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG913421_386 SNP 5.1 barrel medic - Mt3.0 - MtChr5 TOG913421 TOG 3,839,175 - 3,841,017 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_006_TOG913421_2_335 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG913421 TOG 343,316 - 345,166 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898359_255 SNP 6.4 barrel medic - Mt3.0 - MtChr2 TOG898359 TOG 30,580,020 - 30,584,511 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG898359 TOG 2,459,415 - 2,462,344 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_273_TOG898359_1_188 SNP 6.35 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898468_959 SNP 7 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG898468 SNP 128.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG898468 TOG 17,061,576 - 17,063,994 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG898468 SNP 9.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG898468 TOG 43,573,259 - 43,576,421 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_361_TOG898468_1_570 SNP 6.35 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG898468 TOG 30,375,370 - 30,379,838 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG947627_108 SNP 7 soybean - GmJGI8x - Gm13 TOG947627 TOG 43,573,259 - 43,576,421 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG947627 TOG 30,375,370 - 30,379,838 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG947627 SNP 128.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG947627 SNP 9.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG17 Ah2n_TOG947627_1 SNP 6.92 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_144_TOG947627_1_330 SNP 6.35 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898468_473 SNP 7 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG898468 SNP 128.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG898468 TOG 17,061,576 - 17,063,994 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG898468 SNP 9.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG898468 TOG 43,573,259 - 43,576,421 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_361_TOG898468_1_570 SNP 6.35 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG898468 TOG 30,375,370 - 30,379,838 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902834_914 SNP 9.6 soybean - GmJGI8x - Gm08 TOG902834 TOG 16,598,855 - 16,600,955 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902834 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902834 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_344_TOG902834_1_66 SNP 7.99 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG901770_536 SNP 9.6 cowpea - VuCookUCDavis2009 - VuLG02 3_056_TOG901770_2_171 SNP 7.99 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG901770 TOG 16,556,757 - 16,561,025 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG901770 TOG 2,587,477 - 2,590,996 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG901770 SNP 17.5 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896966_360 SNP 10.2 soybean - GmJGI8x - Gm07 TOG896966 TOG 977,148 - 983,975 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896966_1 SNP 54.41 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG963072_292 SNP 10.2 soybean - GmJGI8x - Gm08 TOG963072 TOG 16,221,439 - 16,226,949 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG963072 TOG 1,120,852 - 1,133,961 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_035_TOG963072_2_229 SNP 11.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG963072 TOG 3,085,320 - 3,088,769 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896504_263 SNP 10.8 soybean - GmJGI8x - Gm07 TOG896504 TOG 920,783 - 928,567 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG896504 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900848_76 SNP 16.7 barrel medic - Mt3.0 - MtChr8 TOG900848 TOG 3,703,369 - 3,705,368 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG900848 SNP 22.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG900848 TOG 580,341 - 583,797 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP124 SNP 70.27 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_159_TOG900848_1_191 SNP 15.24 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG903911_181 SNP 23.9 peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP152 SNP 95.937 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG20 Ah2n_TOG903911_1 SNP 0.98 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG903911 SNP 10.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG903911 TOG 3,518,639 - 3,520,742 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG903911 TOG 26,307,473 - 26,309,234 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG903911 TOG 962,618 - 965,440 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG903911 TOG 5,354,626 - 5,357,704 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896681_200 SNP 31.1 soybean - GmJGI8x - Gm05 TOG896681 TOG 40,476,342 - 40,477,734 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG896681_1 SNP 80.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG896681 TOG 1,998,437 - 2,000,950 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP56 SNP 78.757 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896681 SNP 91 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910212_493 SNP 33 soybean - GmJGI8x - Gm07 TOG910212 TOG 4,846,669 - 4,848,500 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG910212 TOG 2,326,334 - 2,328,840 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG910212 SNP 152.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG910212 SNP 39.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP184 SNP 17.833 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_021_TOG910212_2_521 SNP 28.58 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910212_506 SNP 33 soybean - GmJGI8x - Gm07 TOG910212 TOG 4,846,669 - 4,848,500 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG910212 TOG 2,326,334 - 2,328,840 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG910212 SNP 152.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG910212 SNP 39.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP184 SNP 17.833 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_021_TOG910212_2_521 SNP 28.58 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902069_1555 SNP 36.3 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG902069 SNP 41 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG902069 TOG 2,467,701 - 2,472,764 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_200_TOG902069_2_897 SNP 29.89 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG902069 SNP 152.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896701_476 SNP 37.6 soybean - GmJGI8x - Gm16 TOG896701 TOG 2,746,266 - 2,749,849 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG896701 TOG 56,662,787 - 56,666,508 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG896701 TOG 49,685,282 - 49,691,107 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG896701 SNP 44.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG927660_516 SNP 49.9 soybean - GmJGI8x - Gm08 TOG927660 TOG 32,664,363 - 32,669,055 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 4_170_TOG927660_1_971 SNP 54.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 4_072_TOG927660_1_873 SNP 54.4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG927660 TOG 32,273,823 - 32,276,782 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG927660 SNP 80.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899506_243 SNP 50.5 cowpea - VuCookUCDavis2009 - VuLG03 3_145_TOG899506_1_97 SNP 53.75 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG899506 TOG 17,282,839 - 17,291,663 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG899506 TOG 15,741,980 - 15,748,732 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG899506_1 SNP 78.09 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900784_140 SNP 51.8 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG900784 SNP 60.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG900784 TOG 39,440,790 - 39,441,991 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG900784 TOG 18,224,733 - 18,229,097 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897306_326 SNP 51.8 soybean - GmJGI8x - Gm05 TOG897306 TOG 36,819,295 - 36,823,723 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG897306 SNP 81.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897306 TOG 15,423,077 - 15,429,437 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TOG897306 SNP 29.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP73 SNP 38.707 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG897306 SNP 19.5 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897306_418 SNP 51.8 soybean - GmJGI8x - Gm05 TOG897306 TOG 36,819,295 - 36,823,723 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG897306 SNP 81.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897306 TOG 15,423,077 - 15,429,437 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TOG897306 SNP 29.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP73 SNP 38.707 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG897306 SNP 19.5 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908720_441 SNP 52.4 barrel medic - Mt3.0 - MtChr8 TOG908720 TOG 18,990,622 - 18,993,572 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG908720 TOG 26,559,378 - 26,561,449 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG908720 SNP 75.3 (cM) Automated name-based, Automated name-based View Maps