LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG07
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG07
Map Start: 0 cM
Map Stop: 87.2 cM
Features by Type:
61 SNP
61 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 61.       of 3 | Next
pigeonpea - CcCookUCDavis2009 - CcLG07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG894226_876 SNP 87.2 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894226 SNP 82.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894226 TOG 61,870,053 - 61,876,736 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG923601_184 SNP 85.9 soybean - GmJGI8x - Gm18 TOG923601 TOG 61,785,797 - 61,789,545 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897607_46 SNP 85.2 barrel medic - Mt3.0 - MtChr7 TOG897607 TOG 845,071 - 850,485 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG897607 SNP 83.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_187_TOG897607_2_181 SNP 88.19 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897607 TOG 46,591,333 - 46,595,522 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910656_344 SNP 83.3 soybean - GmJGI8x - Gm02 TOG910656 TOG 7,890,621 - 7,896,847 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG910656 TOG 21,245,775 - 21,251,112 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG910656 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_381_TOG910656_2_430 SNP 85.22 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894320_330 SNP 78.8 barrel medic - Mt3.0 - MtChr7 TOG894320 TOG 5,321,982 - 5,327,671 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894320 TOG 8,651,128 - 8,654,991 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_043_TOG894320_2_186 SNP 107.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_120_TOG894320_2_213 SNP 81.93 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894320 SNP 71.6 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902872_138 SNP 78.2 soybean - GmJGI8x - Gm18 TOG902872 TOG 60,671,195 - 60,672,757 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG05 Ah2n_TOG902872_2 SNP 7.12 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG902872 TOG 62,790,444 - 62,802,834 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG902872 TOG 23,428,108 - 23,432,302 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG902872 SNP 71.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG902872 TOG 5,157,938 - 5,162,875 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894475_361 SNP 72.4 soybean - GmJGI8x - Gm18 TOG894475 TOG 59,031,750 - 59,033,577 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894475 TOG 2,308,687 - 2,313,997 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894475 TOG 41,150,379 - 41,155,025 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894475 TOG 42,595,643 - 42,600,610 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG917730_604 SNP 72.4 barrel medic - Mt3.0 - MtChr7 TOG917730 TOG 2,585,062 - 2,591,400 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG917730 SNP 15.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG917730 TOG 20,592,121 - 20,593,841 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG902028_517 SNP 72.4 barrel medic - Mt3.0 - MtChr7 TOG902028 TOG 2,129,426 - 2,135,062 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG902028 TOG 42,719,005 - 42,724,725 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG902028 TOG 41,028,111 - 41,036,943 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG915291_501 SNP 68.5 soybean - GmJGI8x - Gm18 TOG915291 TOG 57,651,335 - 57,653,972 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_069_TOG915291_1_229 SNP 69.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG923107_539 SNP 67.9 soybean - GmJGI8x - Gm18 TOG923107 TOG 57,596,914 - 57,599,618 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG923107 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG923107 SNP 51.6 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG909835_234 SNP 67.9 barrel medic - Mt3.0 - MtChr7 TOG909835 TOG 19,811,857 - 19,815,871 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_368_TOG909835_2_332 SNP 67.24 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG909835_2 SNP 13.84 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG909835 SNP 50.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP183 SNP 71.725 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG909835 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG900992_480 SNP 67.9 barrel medic - Mt3.0 - MtChr7 TOG900992 TOG 20,056,607 - 20,060,434 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG900992 TOG 57,536,304 - 57,538,068 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_190_TOG900992_1_358 SNP 68.22 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG900992 SNP 51.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG900992 TOG 43,712,241 - 43,716,278 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897535_569 SNP 67.9 barrel medic - Mt3.0 - MtChr7 TOG897535 TOG 19,896,467 - 19,899,352 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895662_434 SNP 65.3 barrel medic - Mt3.0 - MtChr7 TOG895662 TOG 18,891,795 - 18,895,292 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG895662 SNP 45.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG895662 TOG 56,558,863 - 56,562,514 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908192_745 SNP 65.3 soybean - GmJGI8x - Gm18 TOG908192 TOG 56,476,861 - 56,478,331 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG908192 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG908192 TOG 18,751,427 - 18,752,866 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG917728_133 SNP 65.3 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG917728 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG917728 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG917728 TOG 44,419,648 - 44,423,266 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG908776_520 SNP 61.4 barrel medic - Mt3.0 - MtChr7 TOG908776 TOG 18,054,300 - 18,058,147 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG908776 TOG 44,946,615 - 44,948,363 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG908776 TOG 36,689,134 - 36,690,897 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG908776 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_350_TOG908776_1_183 SNP 62.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG908776 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG937303_35 SNP 61.4 peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG937303 SNP 35.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG937303 TOG 18,035,757 - 18,038,402 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG937303 TOG 55,981,198 - 56,013,556 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG937303 TOG 36,643,538 - 36,647,303 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_328_TOG937303_2_96 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_272_TOG937303_2_138 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG937303 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG937303 SNP 21.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894898_352 SNP 60.8 soybean - GmJGI8x - Gm09 TOG894898 TOG 45,023,174 - 45,029,219 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_213_TOG894898_1_79 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894898 TOG 55,912,130 - 55,917,154 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894898 TOG 17,985,871 - 17,990,534 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896613_191 SNP 60.8 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG896613 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_180_TOG896613_1_1102 SNP 61.32 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896613 TOG 35,235,078 - 35,236,549 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896613 SNP 20.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896613 TOG 17,783,155 - 17,784,671 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896613 TOG 55,452,029 - 55,453,557 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894898_73 SNP 60.8 soybean - GmJGI8x - Gm09 TOG894898 TOG 45,023,174 - 45,029,219 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_213_TOG894898_1_79 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894898 TOG 55,912,130 - 55,917,154 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894898 TOG 17,985,871 - 17,990,534 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896613_234 SNP 60.8 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG896613 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 4_180_TOG896613_1_1102 SNP 61.32 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896613 TOG 35,235,078 - 35,236,549 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896613 SNP 20.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896613 TOG 17,783,155 - 17,784,671 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG896613 TOG 55,452,029 - 55,453,557 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG901166_641 SNP 55 peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG901166_1 SNP 5.11 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG901166 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_039_TOG901166_1_687 SNP 58.37 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG901166 TOG 54,475,055 - 54,480,208 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG901166 TOG 34,076,400 - 34,077,416 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG901166 SNP 42.4 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG901166_1050 SNP 55 peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG901166_1 SNP 5.11 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TOG901166 SNP 33.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_039_TOG901166_1_687 SNP 58.37 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG901166 TOG 54,475,055 - 54,480,208 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG901166 TOG 34,076,400 - 34,077,416 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG901166 SNP 42.4 (cM) Automated name-based, Automated name-based View Maps