LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set pigeonpea-CcCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CcLG08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: pigeonpea - CcCookUCDavis2009 [ View Map Set Info ]
Map Name: CcLG08
Map Start: 0 cM
Map Stop: 101.1 cM
Features by Type:
46 SNP
46 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 46.       of 2 | Next
pigeonpea - CcCookUCDavis2009 - CcLG08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Cc_TOG901238_231 SNP 101.1 cowpea - VuCookUCDavis2009 - VuLG02 3_161_TOG901238_1_469 SNP 53.52 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG901238 TOG 10,980,766 - 10,983,468 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG901238 TOG 38,250,164 - 38,251,849 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG901238 TOG 2,211,003 - 2,213,611 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG901238 SNP 59.1 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894101_388 SNP 101.1 barrel medic - Mt3.0 - MtChr8 TOG894101 TOG 2,231,799 - 2,236,312 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894101 TOG 10,994,254 - 10,998,025 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894101 TOG 27,473,662 - 27,477,759 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG894864_284 SNP 97.1 chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894864 SNP 52.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894864 SNP 20.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894864 TOG 18,905,974 - 18,908,247 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894864 TOG 18,182,262 - 18,185,199 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG916106_407 SNP 97.1 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG916106_2 SNP 114.35 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr8 Ca_TOG916106 SNP 19.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG916106 TOG 14,485,813 - 14,490,645 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_297_TOG916106_2_152 SNP 60.67 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP204 SNP 101.926 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG916106 TOG 18,821,913 - 18,895,926 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG916106 SNP 20.9 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG905494_668 SNP 95.2 common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG905494 SNP 44.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG905494 TOG 6,035,928 - 6,039,021 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 3_299_TOG905494_1_1055 SNP 34.21 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898550_376 SNP 94.6 peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP88 SNP 103.928 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG898550 TOG 3,296,091 - 3,298,591 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG898550 TOG 6,235,409 - 6,236,278 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG898550 TOG 18,909,643 - 18,912,426 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG898550 TOG 6,913,990 - 6,915,718 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG898550 TOG 44,475,388 - 44,476,409 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG899545_92 SNP 94 soybean - GmJGI8x - Gm03 TOG899545 TOG 1,050,862 - 1,052,158 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906955_612 SNP 94 peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP177 SNP 63.728 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_056_TOG906955_2_702 SNP 38.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG906955_2 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A02 TOG906955 SNP 35.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG906955 TOG 6,768,135 - 6,773,089 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895021_160 SNP 93.4 peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG895021_1 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_179_TOG895021_1_250 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895021 TOG 6,988,174 - 6,993,698 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_058_TOG895021_1_720 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG895021_411 SNP 93.4 peanut - AA_A.duranensis_x_A.stenosperma_e - LG10 Ah2n_TOG895021_1 SNP 0.65 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_179_TOG895021_1_250 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895021 TOG 6,988,174 - 6,993,698 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_058_TOG895021_1_720 SNP 38.85 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897016_434 SNP 88.9 peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG897016_1 SNP 6.74 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG897016 TOG 37,105,781 - 37,116,629 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG897016 TOG 2,115,910 - 2,126,342 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG897016 SNP 44.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG897016 TOG 7,552,617 - 7,560,314 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG897016 SNP 20.3 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG898078_1260 SNP 86.4 chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG898078 SNP 16 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG898078 TOG 29,232,852 - 29,235,947 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG898078 TOG 21,028,775 - 21,031,277 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG909801_61 SNP 86.4 cowpea - VuCookUCDavis2009 - VuLG06 3_204_TOG909801_1_230 SNP 52.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG909801 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG909801 SNP 12 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG909801 TOG 2,993,161 - 2,995,456 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG909801 TOG 6,085,412 - 6,118,658 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG912898_242 SNP 69.6 soybean - GmJGI8x - Gm01 TOG912898 TOG 31,825,621 - 31,828,570 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897351_290 SNP 69.6 soybean - GmJGI8x - Gm01 TOG897351 TOG 31,911,836 - 31,920,270 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG897351 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_380_TOG897351_2_76 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG916154_1025 SNP 69.6 soybean - GmJGI8x - Gm03 TOG916154 TOG 22,138,288 - 22,140,491 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_116_TOG916154_1_607 SNP 52.87 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG02 4_011_TOG916154_1_272 SNP 52.87 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG933994_1045 SNP 59.2 soybean - GmJGI8x - Gm18 TOG933994 TOG 54,747,682 - 54,752,311 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG18 Ah2n_TOG933994_2 SNP 6.09 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG933994 TOG 17,200,134 - 17,204,954 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG933994 TOG 45,635,250 - 45,640,031 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG933994 TOG 26,940,498 - 26,982,518 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG904927_486 SNP 59.2 soybean - GmJGI8x - Gm03 TOG904927 TOG 29,161,474 - 29,170,198 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG904927 TOG 1,602,308 - 1,607,592 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG904927 TOG 9,051,694 - 9,053,929 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG904927 SNP 57.5 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG897209_399 SNP 59.2 peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG897209_2 SNP 23.27 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG897209 TOG 1,716,241 - 1,717,404 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG897209 SNP 37.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG897209 TOG 40,842,006 - 40,845,243 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG897209 TOG 16,982,012 - 16,985,567 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP72 SNP 53.723 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG906662_427 SNP 55.5 barrel medic - Mt3.0 - MtChr1 TOG906662 TOG 807,797 - 809,976 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_092_TOG906662_2_469 SNP 47.41 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG906662 TOG 2,174,052 - 2,176,648 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG906662 SNP 39.2 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG906662 SNP 85.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG906662 TOG 28,667,356 - 28,670,435 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG928182_841 SNP 48.7 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG928182 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG928182 TOG 26,593,897 - 26,597,366 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG928182 TOG 2,687,763 - 2,689,607 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG928182 TOG 28,367,682 - 28,369,403 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG928182 TOG 14,855,070 - 14,856,590 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_277_TOG928182_1_53 SNP 61.33 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG910601_1130 SNP 46.7 cowpea - VuCookUCDavis2009 - VuLG03 3_346_TOG910601_2_712 SNP 61.33 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG910601 SNP 62.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG910601 TOG 26,248,846 - 26,252,202 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG910601 TOG 39,752,630 - 39,755,567 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896498_369 SNP 46.7 soybean - GmJGI8x - Gm07 TOG896498 TOG 39,746,120 - 39,748,347 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG896498 SNP 62.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896498 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG896498 TOG 2,141,814 - 2,146,464 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG896498 TOG 26,255,779 - 26,262,725 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG922448_261 SNP 45.4 barrel medic - Mt3.0 - MtChr4 TOG922448 TOG 26,171,455 - 26,174,708 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG922448 TOG 39,703,063 - 39,706,006 (cM) Automated name-based, Automated name-based View Maps
Cc_TOG896371_243 SNP 40.7 barrel medic - Mt3.0 - MtChr4 TOG896371 TOG 30,698,991 - 30,703,448 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG896371 TOG 11,873,529 - 11,877,837 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG896371 SNP 96 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG896371 TOG 38,216,901 - 38,221,558 (cM) Automated name-based, Automated name-based View Maps