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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmComposite2003
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps H
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_nematode
QTL_oil
QTL_other-seed
QTL_protein
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmComposite2003 [ View Map Set Info ]
Map Name: H
Map Start: 0 cM
Map Stop: 125.05 cM
Features by Type:
3 Gene
1 PCR
5 QTL_inorganic
5 QTL_insect
5 QTL_leaf-stem
4 QTL_nematode
5 QTL_oil
7 QTL_other-seed
4 QTL_protein
4 QTL_whole-plant
3 QTL_yield
2 RAPD
43 RFLP
44 SNP
52 SSR
187 Total

Map Features

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Items 1 to 25 of 187.       of 8 | Next
soybean - GmComposite2003 - H
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SLW 1-3 QTL_leaf-stem 10.25 - 12.25 No other positions
Pl ht 17-12 QTL_whole-plant 85.49 - 87.49 No other positions
Sd yld 11-4 QTL_yield 68.12 - 70.12 No other positions
SCN 10-4 QTL_nematode 123.05 - 125.05 No other positions
SCN 10-5 QTL_nematode 120.29 - 122.29 No other positions
SCN 11-1 QTL_nematode 123.05 - 125.05 No other positions
SCN 11-2 QTL_nematode 120.29 - 122.29 No other positions
Sat_127 SSR 28.79 soybean - GmCons30cM - H Sat_127 SSR 28.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - H Sat_127 SSR 26.65 (cM) Automated name-based, Automated name-based View Maps
Oil 19-2 QTL_oil 88.52 - 90.52 No other positions
Sd wt 13-7 QTL_other-seed 37.9 - 39.9 No other positions
Sd wt 13-8 QTL_other-seed 80 - 82 No other positions
cqOil-002 QTL_oil 85.8 - 87.8 No other positions
Prot 3-11 QTL_protein 32.17 - 34.17 No other positions
Prot 5-2 QTL_protein 85.8 - 87.8 No other positions
Prot 6-1 QTL_protein 123.05 - 125.05 No other positions
Pl ht 13-4 QTL_whole-plant 77.44 - 79.44 No other positions
Pl ht 4-1 QTL_whole-plant 112.24 - 114.24 No other positions
Lf wdth 2-2 QTL_leaf-stem 47.74 - 49.74 No other positions
Lf wdth 5-2 QTL_leaf-stem 14.9 - 16.9 No other positions
Lf wdth 5-3 QTL_leaf-stem 45.95 - 47.95 No other positions
Oil 4-10 QTL_oil 32.17 - 34.17 No other positions
Oil 6-5 QTL_oil 85.8 - 87.8 No other positions
Oil 7-1 QTL_oil 123.05 - 125.05 No other positions
Ldge 9-2 QTL_whole-plant 77.44 - 79.44 No other positions
Lf area 2-2 QTL_leaf-stem 47.74 - 49.74 No other positions