LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmCons30cM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps M
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmCons30cM [ View Map Set Info ]
Map Name: M
Map Start: -4.09 cM
Map Stop: 140.69 cM
Features by Type:
24 SNP
44 SSR
68 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 68.       of 3 | Next
soybean - GmCons30cM - M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BARC-021879-04229 SNP -4.09 soybean - GmCons40cM - M BARC-021879-04229 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M BARC-021879-04229 SNP -4.08 (cM) Automated name-based, Automated name-based View Maps
Sat_389 SSR 0 soybean - GmCons40cM - M Sat_389 SSR 2.46 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M Sat_389 SSR 0 (cM) Automated name-based, Automated name-based View Maps
Satt404 SSR 0.84 soybean - GmComposite2003 - M Satt404 SSR 0.84 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt404 SSR 1.17 (cM) Automated name-based, Automated name-based View Maps
Sat_391 SSR 1.02 soybean - GmCons40cM - M Sat_391 SSR 6.23 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M Sat_391 SSR 1.02 (cM) Automated name-based, Automated name-based View Maps
GMSC514 SSR 3.05 soybean - GmCons40cM - M GMSC514 SSR 4.53 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M GMSC514 SSR 3.05 (cM) Automated name-based, Automated name-based View Maps
BARC-015439-01969 SNP 3.12 soybean - GmComposite2003 - M BARC-015439-01969 SNP 3.12 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-015439-01969 SNP 5.46 (cM) Automated name-based, Automated name-based View Maps
BARC-018527-03201 SNP 3.12 soybean - GmCons40cM - M BARC-018527-03201 SNP 6.22 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M BARC-018527-03201 SNP 3.12 (cM) Automated name-based, Automated name-based View Maps
BARC-008017-00148 SNP 4.72 soybean - GmComposite2003 - M BARC-008017-00148 SNP 4.72 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-008017-00148 SNP 6.81 (cM) Automated name-based, Automated name-based View Maps
Satt636 SSR 5 soybean - GmComposite2003 - M Satt636 SSR 5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt636 SSR 8.23 (cM) Automated name-based, Automated name-based View Maps
BARC-007722-00082 SNP 7.2 soybean - GmComposite2003 - M BARC-007722-00082 SNP 7.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-007722-00082 SNP 8.89 (cM) Automated name-based, Automated name-based View Maps
Satt590 SSR 7.84 soybean - GmCons40cM - M Satt590 SSR 7.75 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M Satt590 SSR 7.84 (cM) Automated name-based, Automated name-based View Maps
BARC-044075-08603 SNP 8.64 soybean - GmCons40cM - M BARC-044075-08603 SNP 8.57 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M BARC-044075-08603 SNP 8.63 (cM) Automated name-based, Automated name-based View Maps
BARC-027718-06640 SNP 11.45 soybean - GmComposite2003 - M BARC-027718-06640 SNP 11.44 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-027718-06640 SNP 9.18 (cM) Automated name-based, Automated name-based View Maps
Satt201 SSR 13.56 soybean - GmComposite2003 - M Satt201 SSR 13.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt201 SSR 12.55 (cM) Automated name-based, Automated name-based View Maps
BARC-025961-05189 SNP 17.88 soybean - GmComposite2003 - M BARC-025961-05189 SNP 17.88 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-025961-05189 SNP 17.71 (cM) Automated name-based, Automated name-based View Maps
Satt150 SSR 18.58 soybean - GmComposite2003 - M Satt150 SSR 18.58 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt150 SSR 16.86 (cM) Automated name-based, Automated name-based View Maps
Sat_316 SSR 21 soybean - GmCons40cM - M Sat_316 SSR 18.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M Sat_316 SSR 21 (cM) Automated name-based, Automated name-based View Maps
BARC-042631-08332 SNP 23.39 soybean - GmComposite2003 - M BARC-042631-08332 SNP 23.39 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-042631-08332 SNP 22.91 (cM) Automated name-based, Automated name-based View Maps
BARC-031399-07088 SNP 29.98 soybean - GmCons40cM - M BARC-031399-07088 SNP 31 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M BARC-031399-07088 SNP 29.98 (cM) Automated name-based, Automated name-based View Maps
BARC-013845-01256 SNP 33.19 soybean - GmComposite2003 - M BARC-013845-01256 SNP 33.18 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-013845-01256 SNP 27.93 (cM) Automated name-based, Automated name-based View Maps
Satt567 SSR 33.47 soybean - GmComposite2003 - M Satt567 SSR 33.47 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt567 SSR 32.75 (cM) Automated name-based, Automated name-based View Maps
BARC-015945-02020 SNP 35.65 soybean - GmCons40cM - M BARC-015945-02020 SNP 32.18 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M BARC-015945-02020 SNP 35.65 (cM) Automated name-based, Automated name-based View Maps
Satt540 SSR 35.85 soybean - GmCons40cM - M Satt540 SSR 34.27 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - M Satt540 SSR 35.84 (cM) Automated name-based, Automated name-based View Maps
Satt435 SSR 38.94 soybean - GmComposite2003 - M Satt435 SSR 38.93 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M Satt435 SSR 36.98 (cM) Automated name-based, Automated name-based View Maps
BARC-039383-07310 SNP 39.52 soybean - GmComposite2003 - M BARC-039383-07310 SNP 39.51 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - M BARC-039383-07310 SNP 39.94 (cM) Automated name-based, Automated name-based View Maps