LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmCons30cM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps O
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmCons30cM [ View Map Set Info ]
Map Name: O
Map Start: 0 cM
Map Stop: 143.74 cM
Features by Type:
41 SNP
47 SSR
88 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 88.       of 4 | Next
soybean - GmCons30cM - O
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Sat_196 SSR 0 soybean - GmComposite2003 - O Sat_196 SSR 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Sat_196 SSR 0 (cM) Automated name-based, Automated name-based View Maps
Satt358 SSR 5.44 soybean - GmCons40cM - O Satt358 SSR 5.42 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Satt358 SSR 5.44 (cM) Automated name-based, Automated name-based View Maps
Satt487 SSR 9.53 soybean - GmComposite2003 - O Satt487 SSR 9.53 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Satt487 SSR 9.04 (cM) Automated name-based, Automated name-based View Maps
Satt500 SSR 14.17 soybean - GmComposite2003 - O Satt500 SSR 14.17 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Satt500 SSR 12.62 (cM) Automated name-based, Automated name-based View Maps
Satt492 SSR 17.25 soybean - GmComposite2003 - O Satt492 SSR 17.25 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Satt492 SSR 15.9 (cM) Automated name-based, Automated name-based View Maps
BARC-029811-06423 SNP 18.03 soybean - GmCons40cM - O BARC-029811-06423 SNP 15.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O BARC-029811-06423 SNP 18.02 (cM) Automated name-based, Automated name-based View Maps
BARC-029189-06116 SNP 18.7 soybean - GmComposite2003 - O BARC-029189-06116 SNP 18.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O BARC-029189-06116 SNP 14.26 (cM) Automated name-based, Automated name-based View Maps
Sat_321 SSR 19.44 soybean - GmCons40cM - O Sat_321 SSR 16.34 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Sat_321 SSR 19.44 (cM) Automated name-based, Automated name-based View Maps
BARC-010119-00522 SNP 19.7 soybean - GmCons40cM - O BARC-010119-00522 SNP 17.76 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O BARC-010119-00522 SNP 19.7 (cM) Automated name-based, Automated name-based View Maps
BARC-020559-04669 SNP 19.7 soybean - GmCons40cM - O BARC-020559-04669 SNP 17.36 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O BARC-020559-04669 SNP 19.7 (cM) Automated name-based, Automated name-based View Maps
Satt445 SSR 20.43 soybean - GmCons40cM - O Satt445 SSR 17.43 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Satt445 SSR 20.43 (cM) Automated name-based, Automated name-based View Maps
Sat_303 SSR 20.93 soybean - GmCons40cM - O Sat_303 SSR 17.52 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Sat_303 SSR 20.93 (cM) Automated name-based, Automated name-based View Maps
Sat_318 SSR 24.61 soybean - GmCons40cM - O Sat_318 SSR 20.48 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Sat_318 SSR 24.61 (cM) Automated name-based, Automated name-based View Maps
BARC-040995-07875 SNP 33.19 soybean - GmComposite2003 - O BARC-040995-07875 SNP 33.19 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O BARC-040995-07875 SNP 29.48 (cM) Automated name-based, Automated name-based View Maps
Satt653 SSR 38.09 soybean - GmCons40cM - O Satt653 SSR 32.79 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Satt653 SSR 38.09 (cM) Automated name-based, Automated name-based View Maps
Sat_145 SSR 39.25 soybean - GmComposite2003 - O Sat_145 SSR 39.25 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Sat_145 SSR 34.66 (cM) Automated name-based, Automated name-based View Maps
Satt259 SSR 39.82 soybean - GmCons40cM - O Satt259 SSR 34.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Satt259 SSR 39.82 (cM) Automated name-based, Automated name-based View Maps
BARC-018101-02517 SNP 40.82 soybean - GmCons40cM - O BARC-018101-02517 SNP 10.75 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O BARC-018101-02517 SNP 40.82 (cM) Automated name-based, Automated name-based View Maps
BARC-018103-02520 SNP 40.82 soybean - GmComposite2003 - O BARC-018103-02520 SNP 40.82 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O BARC-018103-02520 SNP 37.62 (cM) Automated name-based, Automated name-based View Maps
Satt347 SSR 42.29 soybean - GmCons40cM - O Satt347 SSR 36.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Satt347 SSR 42.29 (cM) Automated name-based, Automated name-based View Maps
Satt420 SSR 49.71 soybean - GmComposite2003 - O Satt420 SSR 49.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Satt420 SSR 47.08 (cM) Automated name-based, Automated name-based View Maps
BARC-017045-02182 SNP 50.12 soybean - GmComposite2003 - O BARC-017045-02182 SNP 50.12 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O BARC-017045-02182 SNP 43.74 (cM) Automated name-based, Automated name-based View Maps
Sat_221 SSR 51.01 soybean - GmCons40cM - O Sat_221 SSR 46.21 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Sat_221 SSR 51 (cM) Automated name-based, Automated name-based View Maps
Sat_291 SSR 51.9 soybean - GmCons40cM - O Sat_291 SSR 54.39 (cM) Automated name-based, Automated name-based View Maps
soybean - GmComposite2003 - O Sat_291 SSR 51.9 (cM) Automated name-based, Automated name-based View Maps
Satt473 SSR 52.12 soybean - GmComposite2003 - O Satt473 SSR 52.11 (cM) Automated name-based, Automated name-based View Maps
soybean - GmCons40cM - O Satt473 SSR 47.97 (cM) Automated name-based, Automated name-based View Maps