LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm09
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm09
Map Start: 0 cM
Map Stop: 46,843,750 cM
Features by Type:
132 Marker
245 SNP
102 SSR
120 TOG
599 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 599.       of 24 | Next
soybean - GmJGI8x - Gm09
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893951 TOG 6,437,645 - 6,440,939 barrel medic - Mt3.0 - MtChr2 TOG893951 TOG 13,068,845 - 28,502,898 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG893951 TOG 544,970 - 548,198 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG898830 TOG 43,632,179 - 43,635,393 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG893951 TOG 15,340,953 - 15,344,170 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG898830 TOG 13,068,959 - 13,072,882 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893951 TOG 5,628,141 - 5,630,852 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893951 TOG 42,366,711 - 42,369,725 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG893951 TOG 43,632,068 - 43,639,840 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG893951 TOG 15,642,912 - 15,646,232 (cM) Automated name-based View Maps
TOG894007 TOG 30,139,827 - 30,143,174 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_634 SNP 73 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894007 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894007 TOG 41,705,310 - 41,730,384 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_147_TOG894007_2_759 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894007 TOG 78,252,403 - 78,284,980 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_66 SNP 67.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894125 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894007 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894007 TOG 7,005,674 - 7,008,859 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894007 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894007 TOG 885,804 - 888,861 (cM) Automated name-based View Maps
TOG894125 TOG 30,139,827 - 30,143,174 lotus - LjKazusa200905 - LjChr2 TOG894125 TOG 78,252,403 - 78,255,463 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894125 TOG 41,705,310 - 41,730,384 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894125 TOG 7,005,674 - 7,008,859 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894125 TOG 885,804 - 888,861 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894125 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894007 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
TOG894127 TOG 42,595,643 - 42,600,610 lotus - LjKazusa200905 - LjChr1 TOG894475 TOG 41,150,379 - 41,155,025 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894127 TOG 41,150,379 - 41,155,025 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894127 TOG 2,308,687 - 2,313,997 (cM) Automated name-based, Automated name-based View Maps
TOG894134 TOG 43,069,118 - 43,073,547 barrel medic - Mt3.0 - MtChr7 TOG894134 TOG 1,468,705 - 1,473,702 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894134 TOG 58,493,638 - 58,498,227 (cM) Automated name-based View Maps
TOG894254 TOG 383,190 - 385,502 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894254 SNP 39.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG894254 TOG 36,088,159 - 36,091,719 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894254 TOG 20,418,642 - 20,421,055 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894254 TOG 8,543,709 - 8,546,779 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG894254 TOG 944,767 - 947,537 (cM) Automated name-based View Maps
TOG894325 TOG 3,541,831 - 3,548,285 No other positions
TOG894475 TOG 42,595,643 - 42,600,610 soybean - GmJGI8x - Gm18 TOG894475 TOG 59,031,750 - 59,033,577 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894475 TOG 2,308,687 - 2,313,997 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894475 TOG 41,150,379 - 41,155,025 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894127 TOG 41,150,379 - 41,155,025 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894475_361 SNP 72.4 (cM) Automated name-based, Automated name-based View Maps
TOG894516 TOG 1,180,261 - 1,184,160 cowpea - VuCookUCDavis2009 - VuLG11 4_137_TOG894516_1_333 SNP 34.91 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894516_303 SNP 68.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894516 TOG 8,852,636 - 8,857,086 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894516 SNP 38.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894516 TOG 9,449,781 - 9,452,538 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG894516 SNP 67.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_076_TOG894516_1_54 SNP 40.3 (cM) Automated name-based, Automated name-based View Maps
TOG894658 TOG 37,693,839 - 37,698,614 common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG894658 SNP 37.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_090_TOG894658_1_1011 SNP 35.51 (cM) Automated name-based, Automated name-based View Maps
TOG894746 TOG 37,071,029 - 37,075,209 soybean - GmJGI8x - Gm07 TOG894746 TOG 10,292,344 - 10,296,078 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894746 TOG 12,849,625 - 12,873,726 (cM) Automated name-based, Automated name-based View Maps
TOG894784 TOG 38,965,315 - 38,970,156 barrel medic - Mt3.0 - MtChr6 TOG894784 TOG 21,990,899 - 21,994,397 (cM) Automated name-based, Automated name-based View Maps
TOG894791 TOG 43,771,799 - 43,773,488 lotus - LjKazusa200905 - LjChr0 TOG894791 TOG 11,984,421 - 11,986,659 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894791 TOG 57,478,600 - 57,480,637 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894791 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894791 TOG 19,957,873 - 19,960,075 (cM) Automated name-based, Automated name-based View Maps
TOG894882 TOG 10,043,254 - 10,056,455 soybean - GmJGI8x - Gm15 TOG894882 TOG 20,814,615 - 20,826,021 (cM) Automated name-based View Maps
TOG894898 TOG 45,023,174 - 45,029,219 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894898_352 SNP 60.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG07 3_213_TOG894898_1_79 SNP 61.97 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894898 TOG 55,912,130 - 55,917,154 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894898_73 SNP 60.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894898 TOG 17,985,871 - 17,990,534 (cM) Automated name-based, Automated name-based View Maps
TOG894921 TOG 42,122,057 - 42,123,580 soybean - GmJGI8x - Gm12 TOG894921 TOG 549,186 - 552,353 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894921 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
TOG895058 TOG 45,635,250 - 45,640,031 soybean - GmJGI8x - Gm18 TOG895058 TOG 54,747,894 - 54,752,311 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895058 TOG 26,977,960 - 26,982,316 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895058 TOG 17,200,353 - 17,204,954 (cM) Automated name-based, Automated name-based View Maps
TOG895162 TOG 45,751,409 - 45,755,488 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895162 SNP 19.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG895162 TOG 37,261,716 - 37,266,553 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG895162 SNP 42.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG895162 TOG 26,292,445 - 26,294,756 (cM) Automated name-based, Automated name-based View Maps
TOG895163 TOG 5,956,968 - 5,962,924 barrel medic - Mt3.0 - MtChr1 TOG895163 TOG 5,062,377 - 5,067,564 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895163 SNP 100 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm07 TOG895163 TOG 779,130 - 783,160 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG895163 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG895163 TOG 64,676,756 - 64,680,685 (cM) Automated name-based, Automated name-based View Maps
TOG895237 TOG 1,160,137 - 1,164,123 soybean - GmJGI8x - Gm15 TOG895237 TOG 9,427,972 - 9,432,417 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG903860 TOG 8,824,196 - 8,828,539 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr2 Ca_TOG895237 SNP 67.6 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_099_TOG895237_1_443 SNP 34.91 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG895237_534 SNP 65.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG895237 TOG 8,824,196 - 8,828,539 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG895237_1 SNP 27.92 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG11 4_129_TOG895237_1_322 SNP 34.91 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG895237_853 SNP 65.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG895237 SNP 38.1 (cM) Automated name-based, Automated name-based View Maps
TOG895369 TOG 42,940,281 - 42,942,646 No other positions
TOG895492 TOG 37,440,143 - 37,442,720 barrel medic - Mt3.0 - MtChr6 TOG895492 TOG 16,926,700 - 16,929,451 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG895492_228 SNP 13.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_166_TOG895492_2_412 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG895492_1 SNP 34.77 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_018_TOG895492_2_866 SNP 33.86 (cM) Automated name-based, Automated name-based View Maps
TOG895526 TOG 18,972,887 - 18,977,054 lotus - LjKazusa200905 - LjChr1 TOG895526 TOG 79,291,497 - 79,304,367 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG895526 TOG 45,975,367 - 45,977,280 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895526 TOG 43,487,062 - 43,493,130 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895526 TOG 14,782,804 - 14,787,465 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895526 TOG 27,542,474 - 27,546,048 (cM) Automated name-based View Maps
TOG895534 TOG 43,963,729 - 43,971,412 barrel medic - Mt3.0 - MtChr7 TOG895534 TOG 19,712,997 - 19,719,759 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895534 TOG 39,306,257 - 39,307,909 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG895534 TOG 57,259,485 - 57,260,640 (cM) Automated name-based View Maps
TOG895718 TOG 2,489,298 - 2,495,204 No other positions