LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm14
Map Start: 0 cM
Map Stop: 49,711,204 cM
Features by Type:
109 Marker
181 SNP
65 SSR
68 TOG
423 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 423.       of 17 | Next
soybean - GmJGI8x - Gm14
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893963 TOG 2,168,594 - 2,170,255 barrel medic - Mt3.0 - MtChr2 TOG893963 TOG 27,635,069 - 27,636,662 (cM) Automated name-based, Automated name-based View Maps
TOG894007 TOG 885,804 - 888,861 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_634 SNP 73 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894007 TOG 78,252,403 - 78,284,980 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_66 SNP 67.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894007 TOG 7,005,674 - 7,008,859 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894007 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894007 TOG 41,705,310 - 41,730,384 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894007 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894007 TOG 30,139,827 - 30,143,174 (cM) Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_147_TOG894007_2_759 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894007 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
TOG894022 TOG 45,983,446 - 45,985,237 soybean - GmJGI8x - Gm06 TOG894022 TOG 11,457,198 - 11,459,090 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894022 SNP 63.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894022 TOG 32,032,517 - 32,033,221 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894022_393 SNP 38.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894022 TOG 4,342,624 - 4,344,446 (cM) Automated name-based View Maps
TOG894070 TOG 1,554,060 - 1,559,256 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894070 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894070_285 SNP 64.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP2 SNP 8.646 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894070 TOG 784,154 - 792,321 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894070 TOG 40,276,785 - 40,278,270 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A07 TOG894070 SNP 11.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894070 TOG 50,232,628 - 50,239,649 (cM) Automated name-based View Maps
TOG894099 TOG 6,019,283 - 6,022,548 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894099 SNP 108.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG894099 TOG 1,772,062 - 1,775,462 (cM) Automated name-based, Automated name-based View Maps
TOG894125 TOG 885,804 - 888,861 lotus - LjKazusa200905 - LjChr2 TOG894125 TOG 78,252,403 - 78,255,463 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894125 TOG 41,705,310 - 41,730,384 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894125 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894125 TOG 30,139,827 - 30,143,174 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894125 TOG 7,005,674 - 7,008,859 (cM) Automated name-based View Maps
TOG894148 TOG 3,775,914 - 3,779,492 barrel medic - Mt3.0 - MtChr5 TOG894148 TOG 36,431,315 - 36,435,302 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894148 TOG 48,373,435 - 48,376,975 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894148 SNP 25.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_107_TOG894148_1_245 SNP 50.91 (cM) Automated name-based, Automated name-based View Maps
TOG894201 TOG 3,949,325 - 3,952,657 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894201 SNP 24.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894201 TOG 69,695,972 - 69,700,925 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894201 TOG 36,158,610 - 36,163,937 (cM) Automated name-based, Automated name-based View Maps
TOG894273 TOG 7,512,950 - 7,517,219 lotus - LjKazusa200905 - LjChr5 TOG894273 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
TOG894289 TOG 3,008,665 - 3,016,217 barrel medic - Mt3.0 - MtChr5 TOG894289 TOG 37,840,092 - 37,846,728 (cM) Automated name-based, Automated name-based View Maps
TOG894379 TOG 7,512,950 - 7,517,219 lotus - LjKazusa200905 - LjChr5 TOG894379 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894379 TOG 5,452,934 - 5,457,621 (cM) Automated name-based, Automated name-based View Maps
TOG894466 TOG 4,894,246 - 4,895,917 No other positions
TOG894487 TOG 3,363,294 - 3,367,210 lotus - LjKazusa200905 - LjChr2 TOG894487 TOG 70,270,441 - 70,275,583 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG906267 TOG 27,929,037 - 27,935,446 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894487 TOG 27,929,037 - 27,935,446 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG906267 TOG 70,270,441 - 70,275,630 (cM) Automated name-based, Automated name-based View Maps
TOG894557 TOG 5,426,021 - 5,430,269 barrel medic - Mt3.0 - MtChr5 TOG894557 TOG 33,956,240 - 33,960,998 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894557 TOG 2,845,084 - 2,849,013 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894557 SNP 20.4 (cM) Automated name-based, Automated name-based View Maps
TOG894617 TOG 20,040,017 - 20,043,348 barrel medic - Mt3.0 - MtChr1 TOG894617 TOG 1,805,655 - 1,809,708 (cM) Automated name-based, Automated name-based View Maps
TOG894862 TOG 3,008,665 - 3,016,261 cowpea - VuCookUCDavis2009 - VuLG09 3_226_TOG894862_1_154 SNP 52.23 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894862_569 SNP 61 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG894862 TOG 37,840,092 - 37,846,728 (cM) Automated name-based, Automated name-based View Maps
TOG895030 TOG 1,368,739 - 1,375,506 barrel medic - Mt3.0 - MtChr5 TOG895030 TOG 40,401,549 - 40,405,973 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895030 SNP 64.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG895030_2 SNP 2.56 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP20 SNP 9.456 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG895030 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895030_704 SNP 65.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895030_587 SNP 65.3 (cM) Automated name-based, Automated name-based View Maps
TOG895169 TOG 47,884,146 - 47,886,482 soybean - GmJGI8x - Gm02 TOG895169 TOG 45,677,385 - 45,679,632 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895169 TOG 31,708,449 - 31,712,681 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_239_TOG895169_1_504 SNP 40.36 (cM) Automated name-based, Automated name-based View Maps
TOG895229 TOG 16,013,795 - 16,016,620 soybean - GmJGI8x - Gm17 TOG895229 TOG 34,426,496 - 34,429,385 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895229 SNP 89.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_093_TOG895229_1_588 SNP 21.66 (cM) Automated name-based, Automated name-based View Maps
TOG895374 TOG 3,008,665 - 3,016,217 chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895374 SNP 53.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP24 SNP 11.527 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895374 TOG 37,840,092 - 37,846,728 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895374_381 SNP 61 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895374_444 SNP 61 (cM) Automated name-based, Automated name-based View Maps
TOG895412 TOG 47,249,666 - 47,252,651 peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG895412_1 SNP 42.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A07 TOG895412 SNP 32.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895412_540 SNP 45.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895412 TOG 31,033,608 - 31,039,577 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895412 TOG 64,933,430 - 64,936,872 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895412 SNP 43.1 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG895412 SNP 7.3 (cM) Automated name-based, Automated name-based View Maps
TOG895571 TOG 7,512,950 - 7,517,219 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895571 SNP 73.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895571 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895571_403 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG895571_1 SNP 73.46 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP27 SNP 13.758 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895571_579 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A06 TOG895571 SNP 138 (cM) Automated name-based, Automated name-based View Maps
TOG895601 TOG 45,377,579 - 45,379,780 chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895601 SNP 38.8 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG01 3_150_TOG895601_1_127 SNP 47.36 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG895601 TOG 8,701,990 - 8,705,264 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895601 TOG 27,583,397 - 27,585,168 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895601 TOG 43,347,438 - 43,349,990 (cM) Automated name-based View Maps
TOG895737 TOG 468,537 - 473,672 cowpea - VuCookUCDavis2009 - VuLG09 3_156_TOG895737_1_405 SNP 64.76 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895737 TOG 51,234,119 - 51,237,046 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr5 TOG895737 TOG 42,386,204 - 42,393,268 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG895737 TOG 79,640,562 - 79,643,707 (cM) Automated name-based, Automated name-based View Maps
TOG895747 TOG 4,199,594 - 4,204,961 barrel medic - Mt3.0 - MtChr5 TOG895747 TOG 35,784,612 - 35,789,813 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_194_TOG895747_1_177 SNP 49.93 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_012_TOG895747_1_1166 SNP 49.93 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895747 SNP 47.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG895747_2 SNP 29.96 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG895747 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps