LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm19
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm19
Map Start: 0 cM
Map Stop: 50,589,441 cM
Features by Type:
106 Marker
183 SNP
95 SSR
88 TOG
472 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 472.       of 19 | Next
soybean - GmJGI8x - Gm19
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893978 TOG 48,706,739 - 48,710,002 soybean - GmJGI8x - Gm03 TOG893978 TOG 46,076,955 - 46,080,343 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG893978 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG893978 TOG 15,057,528 - 15,060,873 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893978 TOG 16,620,260 - 16,623,576 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893978 TOG 33,647,396 - 33,650,280 (cM) Automated name-based, Automated name-based View Maps
TOG894002 TOG 34,674,185 - 34,677,949 barrel medic - Mt3.0 - MtChr7 TOG894002 TOG 21,744,948 - 21,748,415 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894002 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894002 TOG 4,760,185 - 4,763,799 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894002_124 SNP 29.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894002 SNP 55.6 (cM) Automated name-based, Automated name-based View Maps
TOG894055 TOG 48,706,739 - 48,710,002 soybean - GmJGI8x - Gm03 TOG894055 TOG 46,076,955 - 46,080,343 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894055 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894055 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG894055 TOG 15,057,528 - 15,060,873 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894055 TOG 16,620,260 - 16,623,576 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894055 TOG 33,647,396 - 33,650,280 (cM) Automated name-based, Automated name-based View Maps
TOG894064 TOG 43,996,778 - 44,001,273 lotus - LjKazusa200905 - LjChr1 TOG894064 TOG 75,172,183 - 81,696,352 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP1 SNP 59.055 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894064 TOG 40,364,440 - 40,369,914 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG894064_1 SNP 4.98 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_244_TOG894064_1_219 SNP 24.09 (cM) Automated name-based, Automated name-based View Maps
TOG894078 TOG 47,437,637 - 47,442,376 barrel medic - Mt3.0 - MtChr7 TOG894078 TOG 31,747,430 - 31,752,799 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894078 TOG 44,857,439 - 44,862,268 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894078 TOG 6,376,008 - 6,379,369 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894078 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
TOG894212 TOG 36,720,813 - 36,752,038 lotus - LjKazusa200905 - LjChr0 TOG894212 TOG 33,351,780 - 33,356,468 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894212 TOG 22,999,588 - 23,004,837 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894212 TOG 3,592,515 - 3,597,695 (cM) Automated name-based View Maps
TOG894263 TOG 38,158,681 - 38,168,019 soybean - GmJGI8x - Gm03 TOG894263 TOG 35,303,825 - 35,310,427 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894263 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894263 TOG 24,206,567 - 24,208,720 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894263_635 SNP 19.8 (cM) Automated name-based, Automated name-based View Maps
TOG894296 TOG 47,437,637 - 47,442,376 lotus - LjKazusa200905 - LjChr0 TOG894296 TOG 6,376,008 - 6,379,369 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894296 TOG 31,747,430 - 31,752,799 (cM) Automated name-based, Automated name-based View Maps
TOG894351 TOG 37,787,048 - 37,790,602 lotus - LjKazusa200905 - LjChr1 TOG894351 TOG 66,271,806 - 66,276,195 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894351 SNP 35 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894351 TOG 23,714,253 - 23,717,086 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG894351_1 SNP 8.59 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894351_1338 SNP 21.6 (cM) Automated name-based, Automated name-based View Maps
TOG894812 TOG 49,058,587 - 49,097,019 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG894812 SNP 31.1 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894812_941 SNP 103.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_058_TOG894812_1_312 SNP 42.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894812 TOG 34,032,315 - 34,035,974 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894812_567 SNP 104.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894812 TOG 39,068,266 - 39,070,126 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG894812 SNP 39.6 (cM) Automated name-based, Automated name-based View Maps
TOG895126 TOG 824,209 - 833,576 No other positions
TOG895129 TOG 48,685,548 - 48,687,641 barrel medic - Mt3.0 - MtChr7 TOG895129 TOG 33,628,850 - 33,631,780 (cM) Automated name-based, Automated name-based View Maps
TOG895136 TOG 35,629,111 - 35,631,897 barrel medic - Mt3.0 - MtChr7 TOG895136 TOG 22,247,269 - 22,250,724 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG895136 TOG 4,238,937 - 4,242,157 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895136 TOG 64,115,836 - 64,119,480 (cM) Automated name-based, Automated name-based View Maps
TOG895274 TOG 21,668,235 - 21,672,777 soybean - GmJGI8x - Gm05 TOG895274 TOG 15,082,816 - 15,084,061 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG895274 SNP 18.5 (cM) Automated name-based, Automated name-based View Maps
TOG895329 TOG 34,525,837 - 34,528,743 soybean - GmJGI8x - Gm16 TOG895329 TOG 4,841,712 - 4,844,268 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895329 TOG 21,635,752 - 21,638,731 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895329_769 SNP 29.9 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895329 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
TOG895458 TOG 47,951,047 - 47,955,052 cowpea - VuCookUCDavis2009 - VuLG10 4_035_TOG895458_1_632 SNP 38.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895458_804 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895458 TOG 32,721,557 - 32,726,548 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895458 SNP 27.3 (cM) Automated name-based, Automated name-based View Maps
TOG895526 TOG 45,975,367 - 45,977,280 soybean - GmJGI8x - Gm09 TOG895526 TOG 18,972,887 - 18,977,054 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895526 TOG 43,487,062 - 43,493,130 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895526 TOG 27,542,474 - 27,546,048 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895526 TOG 79,291,497 - 79,304,367 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895526 TOG 14,782,804 - 14,787,465 (cM) Automated name-based, Automated name-based View Maps
TOG895724 TOG 37,957,706 - 37,960,560 barrel medic - Mt3.0 - MtChr7 TOG895724 TOG 24,030,291 - 24,033,021 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895724 SNP 53.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895724 TOG 35,095,569 - 35,097,072 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895724 TOG 67,258,815 - 67,261,684 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_478 SNP 21 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_178_TOG895724_1_427 SNP 48.67 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_591 SNP 21 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895724 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
TOG895917 TOG 50,167,565 - 50,174,240 lotus - LjKazusa200905 - LjChr1 TOG895917 TOG 86,770,703 - 86,775,520 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895917 TOG 34,831,428 - 34,837,347 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895917 TOG 47,429,028 - 47,433,063 (cM) Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895917_364 SNP 109.2 (cM) Automated name-based, Automated name-based View Maps
TOG896180 TOG 40,449,953 - 40,455,200 cowpea - VuCookUCDavis2009 - VuLG08 3_242_TOG896180_1_972 SNP 38.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG896180_90 SNP 75.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896180 TOG 26,195,085 - 26,204,761 (cM) Automated name-based, Automated name-based View Maps
TOG896413 TOG 45,583,947 - 45,589,594 lotus - LjKazusa200905 - LjChr1 TOG912105 TOG 77,332,672 - 77,337,863 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896413 TOG 77,332,672 - 77,337,863 (cM) Automated name-based, Automated name-based View Maps
TOG896448 TOG 46,548,017 - 46,551,889 peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP51 SNP 71.117 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_198_TOG896448_2_163 SNP 18.37 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG896448 SNP 34.6 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896448 TOG 30,739,457 - 30,740,049 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896448 SNP 65.3 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG908843 TOG 5,730,062 - 5,733,559 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896448 TOG 5,730,062 - 5,734,009 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG896448 TOG 44,077,336 - 44,080,634 (cM) Automated name-based View Maps
TOG896491 TOG 48,873,374 - 48,876,865 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG896491 SNP 25.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG896491 TOG 6,476,178 - 6,482,565 (cM) Automated name-based, Automated name-based View Maps
TOG896701 TOG 49,685,282 - 49,691,107 pigeonpea - CcCookUCDavis2009 - CcLG02 Cc_TOG896701_476 SNP 37.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG896701 TOG 56,662,787 - 56,666,508 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG02 Pv_TOG896701 SNP 44.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG896701 TOG 2,746,266 - 2,749,849 (cM) Automated name-based View Maps
TOG896936 TOG 48,168,097 - 48,168,840 barrel medic - Mt3.0 - MtChr1 TOG896936 TOG 20,571,911 - 20,579,384 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896936 TOG 32,910,307 - 32,911,404 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896936 SNP 35.5 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896936_264 SNP 168.6 (cM) Automated name-based, Automated name-based View Maps