LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set soybean-GmJGI8x
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Gm20
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
SNP
SSR
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: soybean - GmJGI8x [ View Map Set Info ]
Map Name: Gm20
Map Start: 0 cM
Map Stop: 46,773,167 cM
Features by Type:
125 Marker
244 SNP
71 SSR
80 TOG
520 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 520.       of 21 | Next
soybean - GmJGI8x - Gm20
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893946 TOG 32,546,284 - 32,550,477 barrel medic - Mt3.0 - MtChr1 TOG893946 TOG 21,209,942 - 21,213,711 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG893946 TOG 37,420,847 - 37,425,210 (cM) Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG900662 TOG 21,209,962 - 21,213,711 (cM) Automated name-based, Automated name-based View Maps
TOG893950 TOG 2,630,319 - 2,689,607 lotus - LjKazusa200905 - LjChr4 TOG903324 TOG 14,853,488 - 14,856,590 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893950 TOG 14,853,488 - 14,856,590 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893950 TOG 28,367,682 - 28,369,403 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG893950 TOG 26,593,897 - 26,597,366 (cM) Automated name-based, Automated name-based View Maps
TOG894039 TOG 37,158,160 - 37,160,227 barrel medic - Mt3.0 - MtChr1 TOG894039 TOG 29,734,675 - 29,736,944 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894039 TOG 1,068,518 - 1,071,783 (cM) Automated name-based, Automated name-based View Maps
TOG894051 TOG 34,439,347 - 34,444,040 No other positions
TOG894177 TOG 34,439,347 - 34,444,040 No other positions
TOG894224 TOG 45,938,652 - 45,943,678 peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP5 SNP 56.733 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894224 TOG 32,721,557 - 32,726,548 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_121 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG894224 TOG 20,770,604 - 20,773,165 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894224 SNP 27.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG894224_897 SNP 97.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG894224 TOG 37,897,249 - 37,900,132 (cM) Automated name-based View Maps
TOG894307 TOG 40,509,434 - 40,512,082 barrel medic - Mt3.0 - MtChr1 TOG894307 TOG 26,464,352 - 26,466,317 (cM) Automated name-based, Automated name-based View Maps
TOG895060 TOG 28,403,486 - 28,407,180 soybean - GmJGI8x - Gm10 TOG895060 TOG 33,680,068 - 33,683,072 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895060 SNP 71.3 (cM) Automated name-based, Automated name-based View Maps
TOG895535 TOG 40,401,354 - 40,405,078 barrel medic - Mt3.0 - MtChr1 TOG895535 TOG 26,730,998 - 26,734,562 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_176_TOG895535_2_219 SNP 54.55 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895535 SNP 50.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG895535 TOG 3,945,776 - 3,948,079 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895535 SNP 55.9 (cM) Automated name-based, Automated name-based View Maps
TOG895538 TOG 39,091,535 - 39,093,319 common bean - PvCookUCDavis2009 - PvLG06 Pv_TOG895538 SNP 14.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895538 TOG 27,895,061 - 27,897,994 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG895538 TOG 45,239,967 - 45,242,645 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895538 TOG 50,877,601 - 50,880,749 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_078_TOG895538_1_457 SNP 57.54 (cM) Automated name-based, Automated name-based View Maps
TOG895846 TOG 32,638,948 - 32,641,718 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG895846 SNP 35.9 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG895846_483 SNP 94.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG895846 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895846 TOG 21,138,665 - 21,141,536 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG895846 TOG 34,364,630 - 34,384,637 (cM) Automated name-based, Automated name-based View Maps
TOG895897 TOG 23,983,553 - 23,990,015 lotus - LjKazusa200905 - LjChr6 TOG895897 TOG 1,240,462 - 1,247,044 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG895897 TOG 11,931,668 - 11,934,036 (cM) Automated name-based, Automated name-based View Maps
TOG896007 TOG 38,737,434 - 38,741,341 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896007_521 SNP 190.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896007 SNP 56 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 3_267_TOG896007_1_1311 SNP 58.53 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896007 TOG 28,429,937 - 28,433,984 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896007_1 SNP 89.84 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A09 SNP38 SNP 51.507 (cM) Automated name-based, Automated name-based View Maps
TOG896043 TOG 22,173,089 - 22,178,142 lotus - LjKazusa200905 - LjChr0 TOG896043 TOG 33,458,466 - 33,470,259 (cM) Automated name-based, Automated name-based View Maps
TOG896078 TOG 46,467,086 - 46,471,447 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896078 SNP 90.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG14 Ah2n_TOG896078_2 SNP 1.29 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896078_791 SNP 212.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896078 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
TOG896214 TOG 45,925,578 - 45,928,969 barrel medic - Mt3.0 - MtChr1 TOG896214 TOG 20,755,503 - 20,758,569 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896214 TOG 37,895,821 - 37,943,375 (cM) Automated name-based View Maps
TOG896432 TOG 38,913,450 - 38,915,168 lotus - LjKazusa200905 - LjChr0 TOG903593 TOG 32,709,006 - 32,711,222 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896432 TOG 28,210,231 - 28,211,449 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896432 TOG 45,521,434 - 45,523,517 (cM) Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 3_353_TOG896432_1_463 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896432 TOG 32,709,006 - 32,711,532 (cM) Automated name-based, Automated name-based View Maps
TOG896495 TOG 45,102,704 - 45,106,748 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896495_124 SNP 170.5 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896495 SNP 31.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896495_2 SNP 80.35 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_131_TOG896495_2_396 SNP 42.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896495 TOG 30,440,132 - 30,447,975 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896495 TOG 19,691,044 - 19,696,534 (cM) Automated name-based, Automated name-based View Maps
TOG896498 TOG 2,141,814 - 2,146,464 soybean - GmJGI8x - Gm07 TOG896498 TOG 39,746,120 - 39,748,347 (cM) Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG896498 SNP 62.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG896498 SNP 42.8 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG896498_369 SNP 46.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG896498 TOG 26,255,779 - 26,262,725 (cM) Automated name-based, Automated name-based View Maps
TOG896610 TOG 43,479,821 - 43,481,986 barrel medic - Mt3.0 - MtChr1 TOG896610 TOG 9,907,915 - 9,909,169 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG908407 TOG 44,243 - 46,522 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG896610 TOG 44,243 - 46,522 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG908407 TOG 9,907,915 - 9,909,169 (cM) Automated name-based, Automated name-based View Maps
TOG896733 TOG 46,467,086 - 46,471,447 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896733_248 SNP 212.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896733 TOG 32,600,845 - 32,605,713 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896733 SNP 68.9 (cM) Automated name-based, Automated name-based View Maps
TOG896837 TOG 45,540,162 - 45,541,230 barrel medic - Mt3.0 - MtChr1 TOG929778 TOG 20,350,443 - 20,351,208 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896837 TOG 81,556,796 - 81,558,332 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896837 TOG 20,350,443 - 20,351,208 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG929778 TOG 81,556,796 - 81,558,601 (cM) Automated name-based, Automated name-based View Maps
TOG896850 TOG 33,899,467 - 33,903,198 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896850_41 SNP 207.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896850 TOG 49,657,469 - 49,660,997 (cM) Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896850 SNP 79.1 (cM) Automated name-based, Automated name-based View Maps
TOG896911 TOG 44,144,211 - 44,145,538 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896911_477 SNP 174.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG896911_1 SNP 80.35 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896911_371 SNP 174.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896911 SNP 29.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896911 TOG 40,147,139 - 40,148,205 (cM) Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG10 4_217_TOG896911_1_140 SNP 43.84 (cM) Automated name-based, Automated name-based View Maps
TOG896972 TOG 40,329,893 - 40,334,651 barrel medic - Mt3.0 - MtChr1 TOG896972 TOG 26,644,061 - 26,809,080 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896972 TOG 44,094,312 - 44,095,965 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896972 TOG 3,873,328 - 3,877,763 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG896972 SNP 33.8 (cM) Automated name-based, Automated name-based View Maps