LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-Mt3.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps MtChr4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
EST
Marker
SNP
SSR
SSR-enriched-cDNA
SSR-enriched-genomic
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - Mt3.0 [ View Map Set Info ]
Map Name: MtChr4
Map Start: 0 cM
Map Stop: 41,875,288 cM
Features by Type:
17 CAPS
12 EST
170 Marker
3 SNP
109 SSR
2 SSR-enriched-cDNA
2 SSR-enriched-genomic
172 TOG
487 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 487.       of 20 | Next
barrel medic - Mt3.0 - MtChr4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893931 TOG 21,239,552 - 21,241,883 soybean - GmJGI8x - Gm02 TOG893931 TOG 45,563,627 - 45,567,950 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG893931 TOG 54,577,829 - 54,581,365 (cM) Automated name-based, Automated name-based View Maps
TOG893950 TOG 26,593,897 - 26,597,366 lotus - LjKazusa200905 - LjChr4 TOG893950 TOG 14,853,488 - 14,856,590 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm20 TOG893950 TOG 2,630,319 - 2,689,607 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893950 TOG 28,367,682 - 28,369,403 (cM) Automated name-based View Maps
TOG893978 TOG 15,057,528 - 15,060,873 barrel medic - Mt3.0 - MtChr7 TOG893978 TOG 33,647,396 - 33,650,280 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894055 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894356 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG893978 TOG 48,706,739 - 48,710,002 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893978 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG893978 TOG 46,076,955 - 46,080,343 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG893978 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
TOG894015 TOG 34,664,833 - 34,666,788 No other positions
TOG894017 TOG 38,379,552 - 38,381,869 lotus - LjKazusa200905 - LjChr4 TOG894017 TOG 68,125,390 - 68,127,445 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894017 TOG 38,511,252 - 38,513,182 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894017 TOG 4,007,441 - 4,009,512 (cM) Automated name-based, Automated name-based View Maps
TOG894055 TOG 15,057,528 - 15,060,873 barrel medic - Mt3.0 - MtChr7 TOG894055 TOG 33,647,396 - 33,650,280 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894055 TOG 46,076,955 - 46,080,343 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894055 SNP 24.9 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894055 TOG 81,261,733 - 81,265,018 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894055 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894356 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893978 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894055 TOG 48,706,739 - 48,710,002 (cM) Automated name-based, Automated name-based View Maps
TOG894091 TOG 19,863,169 - 19,866,796 soybean - GmJGI8x - Gm11 TOG894248 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894091 TOG 3,183,824 - 3,186,891 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG917794 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894796 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG898802 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894091 TOG 41,748,010 - 41,752,807 (cM) Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894091 TOG 965,441 - 966,026 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894091 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894091 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps
TOG894149 TOG 5,218,583 - 5,223,774 No other positions
TOG894200 TOG 6,085,412 - 6,118,658 lotus - LjKazusa200905 - LjChr3 TOG894200 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG909801 TOG 66,397,778 - 66,410,098 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG894200 TOG 2,993,161 - 2,995,456 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG909801 TOG 2,993,161 - 2,995,456 (cM) Automated name-based, Automated name-based View Maps
TOG894248 TOG 19,863,169 - 19,866,796 common bean - PvCookUCDavis2009 - PvLG01 Pv_TOG894248 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894248 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG917794 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894248 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894796 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG898802 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG894248 TOG 965,441 - 966,026 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894248 TOG 3,183,824 - 3,186,891 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894091 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894248 SNP 15.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894248 TOG 41,748,010 - 41,752,807 (cM) Automated name-based View Maps
TOG894257 TOG 38,634,736 - 38,639,597 soybean - GmJGI8x - Gm08 TOG894257 TOG 3,840,168 - 3,841,459 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894257_403 SNP 33 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_050_TOG894257_1_451 SNP 110.39 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894257 TOG 38,656,034 - 38,659,405 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP7 SNP 109.98 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894257_1 SNP 124.78 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894257 TOG 67,949,314 - 67,952,650 (cM) Automated name-based, Automated name-based View Maps
TOG894285 TOG 34,664,833 - 34,666,788 No other positions
TOG894287 TOG 32,453,673 - 32,458,558 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG894287_2 SNP 168.74 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP8 SNP 138.853 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG03 3_347_TOG894287_2_435 SNP 82.22 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894287 TOG 8,865,720 - 8,870,344 (cM) Automated name-based, Automated name-based View Maps
TOG894318 TOG 40,997,850 - 41,000,334 soybean - GmJGI8x - Gm08 TOG894318 TOG 2,253,217 - 2,257,252 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894318 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894318 TOG 40,220,111 - 40,222,535 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG902130 TOG 40,220,111 - 40,222,535 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894874 TOG 40,220,111 - 40,222,535 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG902130 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894874 TOG 64,840,058 - 64,843,050 (cM) Automated name-based, Automated name-based View Maps
TOG894334 TOG 16,684,643 - 16,693,779 soybean - GmJGI8x - Gm11 TOG909974 TOG 11,566,275 - 11,571,132 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894334 TOG 11,566,275 - 11,571,132 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894334 TOG 5,197,880 - 5,206,883 (cM) Automated name-based, Automated name-based View Maps
TOG894356 TOG 15,057,528 - 15,060,873 soybean - GmJGI8x - Gm11 TOG894055 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894356 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893978 TOG 16,620,260 - 16,623,576 (cM) Automated name-based, Automated name-based View Maps
TOG894383 TOG 40,652,727 - 40,656,065 soybean - GmJGI8x - Gm05 TOG894383 TOG 40,037,959 - 40,039,803 (cM) Automated name-based, Automated name-based View Maps
TOG894393 TOG 26,646,420 - 26,648,405 soybean - GmJGI8x - Gm02 TOG894393 TOG 7,076,625 - 7,079,573 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894393 TOG 32,282,632 - 32,285,556 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 SNP11 SNP 9.514 (cM) Automated name-based, Automated name-based View Maps
TOG894397 TOG 40,510,984 - 40,512,918 lotus - LjKazusa200905 - LjChr4 TOG894397 TOG 65,766,872 - 65,769,042 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG943383 TOG 65,766,967 - 65,769,039 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG943383 TOG 2,593,255 - 2,595,152 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG894397 TOG 2,593,255 - 2,595,152 (cM) Automated name-based, Automated name-based View Maps
TOG894415 TOG 16,345,787 - 16,348,452 peanut - AA_A.duranensis_x_A.duranensis_a - A02 SNP12 SNP 51.441 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894415 SNP 29.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894415 TOG 11,352,021 - 11,354,483 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894415_211 SNP 18.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG05 Pv_TOG894415 SNP 34.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_141_TOG894415_2_119 SNP 24.41 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894415 TOG 5,387,881 - 5,390,486 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894415_92 SNP 18.4 (cM) Automated name-based, Automated name-based View Maps
TOG894656 TOG 35,059,912 - 35,063,680 lotus - LjKazusa200905 - LjChr4 TOG894656 TOG 67,928,518 - 67,932,413 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894656 TOG 37,097,656 - 37,101,847 (cM) Automated name-based, Automated name-based View Maps
TOG894700 TOG 38,118,785 - 38,120,185 soybean - GmJGI8x - Gm08 TOG894700 TOG 39,808,721 - 39,810,815 (cM) Automated name-based, Automated name-based View Maps
TOG894747 TOG 17,143,919 - 17,149,196 soybean - GmJGI8x - Gm12 TOG894747 TOG 4,957,660 - 4,960,389 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG894747_1 SNP 58.53 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894747 TOG 78,123,865 - 78,128,820 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP16 SNP 53.213 (cM) Automated name-based, Automated name-based View Maps
TOG894755 TOG 35,583,089 - 35,587,654 soybean - GmJGI8x - Gm08 TOG894755 TOG 12,176,322 - 12,181,745 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894755 SNP 97.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894755 SNP 78 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894755 TOG 56,255,797 - 56,259,678 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894755_348 SNP 0 (cM) Automated name-based, Automated name-based View Maps
TOG894796 TOG 19,863,169 - 19,866,796 soybean - GmJGI8x - Gm11 TOG894248 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG917794 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894796 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG898802 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894091 TOG 8,988,547 - 8,991,996 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894796 TOG 41,748,010 - 41,752,807 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG894796 TOG 53,048,756 - 53,052,144 (cM) Automated name-based, Automated name-based View Maps