LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-Mt3.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps MtChr5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
CAPS
EST
Marker
SNP
SSR
SSR-BAC
SSR-enriched-cDNA
SSR-enriched-genomic
TOG
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - Mt3.0 [ View Map Set Info ]
Map Name: MtChr5
Map Start: 0 cM
Map Stop: 43,056,454 cM
Features by Type:
19 CAPS
8 EST
201 Marker
2 SNP
103 SSR
2 SSR-BAC
5 SSR-enriched-cDNA
4 SSR-enriched-genomic
212 TOG
556 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 556.       of 23 | Next
barrel medic - Mt3.0 - MtChr5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TOG893953 TOG 32,172,888 - 32,178,308 soybean - GmJGI8x - Gm18 TOG893953 TOG 3,867,744 - 3,873,453 (cM) Automated name-based, Automated name-based View Maps
TOG893962 TOG 42,097,629 - 42,100,137 soybean - GmJGI8x - Gm06 TOG893962 TOG 11,730,656 - 11,741,751 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG893962 TOG 86,639,586 - 86,641,313 (cM) Automated name-based, Automated name-based View Maps
TOG893966 TOG 8,775,599 - 8,778,423 soybean - GmJGI8x - Gm11 TOG893966 TOG 5,934,201 - 5,936,349 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG893966 TOG 49,300,256 - 49,302,728 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG893966 TOG 1,787,945 - 1,791,148 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG893966 TOG 38,120,300 - 38,122,537 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG893966 TOG 68,896,467 - 68,898,639 (cM) Automated name-based, Automated name-based View Maps
TOG893999 TOG 8,353,188 - 8,355,254 soybean - GmJGI8x - Gm16 TOG893999 TOG 27,923,598 - 27,925,388 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG893999 TOG 4,435,003 - 4,436,786 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG893999 TOG 5,679,431 - 5,680,908 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG893999 TOG 18,390,598 - 18,392,241 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG893999 TOG 15,990,897 - 16,004,808 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG893999 TOG 22,007,473 - 22,008,986 (cM) Automated name-based, Automated name-based View Maps
TOG894007 TOG 41,705,310 - 41,730,384 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_634 SNP 73 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894007 TOG 78,252,403 - 78,284,980 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894007_66 SNP 67.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894007 TOG 7,005,674 - 7,008,859 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894007 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894007 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894007 TOG 30,139,827 - 30,143,174 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894007 TOG 885,804 - 888,861 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG05 4_147_TOG894007_2_759 SNP 12.67 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894007 SNP 37.7 (cM) Automated name-based, Automated name-based View Maps
TOG894009 TOG 1,617,426 - 1,619,603 soybean - GmJGI8x - Gm18 TOG894009 TOG 57,651,335 - 57,653,972 (cM) Automated name-based, Automated name-based View Maps
TOG894012 TOG 37,962,212 - 37,965,410 lotus - LjKazusa200905 - LjChr6 TOG894012 TOG 33,813,041 - 33,815,777 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm04 TOG894012 TOG 43,558,799 - 43,561,321 (cM) Automated name-based, Automated name-based View Maps
TOG894021 TOG 18,199,602 - 18,202,114 barrel medic - Mt3.0 - MtChr7 TOG894021 TOG 1,746,464 - 1,748,575 (cM) Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894021 TOG 10,623,540 - 10,625,426 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894021 TOG 5,471,233 - 5,473,224 (cM) Automated name-based, Automated name-based View Maps
TOG894044 TOG 4,206,308 - 4,210,079 common bean - PvCookUCDavis2009 - PvLG04 Pv_TOG894044 SNP 0 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894044 TOG 5,095,106 - 5,097,307 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894044 TOG 2,777,697 - 2,780,901 (cM) Automated name-based, Automated name-based View Maps
TOG894052 TOG 32,172,888 - 32,178,308 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894052 SNP 20.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894052 TOG 3,867,744 - 3,873,453 (cM) Automated name-based, Automated name-based View Maps
TOG894057 TOG 3,427,535 - 3,431,124 soybean - GmJGI8x - Gm01 TOG894057 TOG 53,389,713 - 53,393,321 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG904926 TOG 2,196,794 - 2,199,777 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894057 TOG 2,196,794 - 2,199,777 (cM) Automated name-based, Automated name-based View Maps
TOG894061 TOG 37,962,212 - 37,965,410 soybean - GmJGI8x - Gm02 TOG894061 TOG 49,033,446 - 49,035,965 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG894061 SNP 54.2 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr6 TOG894061 TOG 33,813,041 - 33,815,777 (cM) Automated name-based, Automated name-based View Maps
TOG894063 TOG 15,005,806 - 15,012,079 lotus - LjKazusa200905 - LjChr2 TOG894063 TOG 41,633,130 - 41,639,447 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894063 TOG 960,878 - 962,201 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894063 TOG 2,981,774 - 2,989,377 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG04 Cc_TOG894063_502 SNP 52.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894063 TOG 3,404,540 - 3,410,822 (cM) Automated name-based, Automated name-based View Maps
TOG894067 TOG 32,172,888 - 32,178,308 soybean - GmJGI8x - Gm18 TOG894067 TOG 3,867,744 - 3,873,453 (cM) Automated name-based, Automated name-based View Maps
TOG894070 TOG 40,276,785 - 40,278,270 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894070 SNP 3.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894070_285 SNP 64.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 SNP2 SNP 8.646 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr2 TOG894070 TOG 784,154 - 792,321 (cM) Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A07 TOG894070 SNP 11.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894070 TOG 50,232,628 - 50,239,649 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894070 TOG 1,554,060 - 1,559,256 (cM) Automated name-based, Automated name-based View Maps
TOG894073 TOG 19,787,442 - 19,791,048 soybean - GmJGI8x - Gm13 TOG894073 TOG 37,943,340 - 37,946,604 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894073 TOG 34,754,666 - 34,758,603 (cM) Automated name-based, Automated name-based View Maps
TOG894125 TOG 41,705,310 - 41,730,384 lotus - LjKazusa200905 - LjChr2 TOG894125 TOG 78,252,403 - 78,255,463 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894125 TOG 885,804 - 888,861 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG894125 TOG 32,702,242 - 32,724,269 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG894125 TOG 30,139,827 - 30,143,174 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894125 TOG 7,005,674 - 7,008,859 (cM) Automated name-based, Automated name-based View Maps
TOG894129 TOG 1,944,972 - 1,947,561 soybean - GmJGI8x - Gm08 TOG894129 TOG 1,858,698 - 1,865,068 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894129 TOG 40,588,095 - 40,594,512 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894129 TOG 59,349,360 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894414 TOG 54,543,754 - 54,546,769 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG894129 TOG 54,543,754 - 54,546,769 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894414 TOG 59,351,121 - 59,354,256 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG894129 TOG 63,617,187 - 63,690,799 (cM) Automated name-based, Automated name-based View Maps
TOG894141 TOG 31,612,240 - 31,616,586 cowpea - VuCookUCDavis2009 - VuLG09 3_104_TOG894141_1_98 SNP 39.71 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894141 SNP 11.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894141 TOG 45,529,727 - 45,533,569 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894141_381 SNP 46.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG894141_1 SNP 82 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_358_TOG894141_1_172 SNP 39.71 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG894141_93 SNP 46.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP1067 SNP 37.338 (cM) Automated name-based, Automated name-based View Maps
TOG894148 TOG 36,431,315 - 36,435,302 soybean - GmJGI8x - Gm02 TOG894148 TOG 48,373,435 - 48,376,975 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894148 SNP 25.5 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_107_TOG894148_1_245 SNP 50.91 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894148 TOG 3,775,914 - 3,779,492 (cM) Automated name-based, Automated name-based View Maps
TOG894154 TOG 14,833,326 - 14,838,399 soybean - GmJGI8x - Gm01 TOG894154 TOG 3,283,710 - 3,286,852 (cM) Automated name-based, Automated name-based View Maps
TOG894168 TOG 2,024,242 - 2,033,589 No other positions
TOG894201 TOG 36,158,610 - 36,163,937 common bean - PvCookUCDavis2009 - PvLG07 Pv_TOG894201 SNP 24.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894201 TOG 69,695,972 - 69,700,925 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG894201 TOG 3,949,325 - 3,952,657 (cM) Automated name-based, Automated name-based View Maps
TOG894262 TOG 38,265,662 - 38,296,294 common bean - PvCookUCDavis2009 - PvLG11 Pv_TOG894262 SNP 61.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG894262 TOG 4,323,800 - 4,329,806 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr5 Ca_TOG894262 SNP 55 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894262 TOG 49,186,659 - 49,188,373 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG894262 TOG 73,211,435 - 73,216,879 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_256_TOG894262_1_292 SNP 54.88 (cM) Automated name-based, Automated name-based View Maps
TOG894267 TOG 29,995,367 - 30,000,588 soybean - GmJGI8x - Gm11 TOG894267 TOG 27,110,774 - 27,115,437 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG894267 SNP 36.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG894267 TOG 5,430,748 - 5,439,482 (cM) Automated name-based, Automated name-based View Maps