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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set barrel medic-MtYoungUMinn2006
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SNP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: barrel medic - MtYoungUMinn2006 [ View Map Set Info ]
Map Name: 6
Map Start: -3 cM
Map Stop: 52.6 cM
Features by Type:
17 CAPS
4 Marker
1 SNP
53 SSR
75 Total

Map Features

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Items 1 to 25 of 75.       of 3 | Next
barrel medic - MtYoungUMinn2006 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
R-EST-AW684911 Marker 47.9 No other positions
001A10 SSR 1.4 No other positions
005B08 SSR 44.2 No other positions
004G02 SSR 28.7 No other positions
44D11L CAPS 39.1 No other positions
TE001 CAPS 47.9 No other positions
001B01 SSR 48 No other positions
001D12 SSR 47.9 No other positions
003D03 SSR 41.3 No other positions
MTIC93 SSR 42.5 alfalfa - MsJulier2003 - 6 MTIC93 SSR 117.01 (cM) Automated name-based, Automated name-based View Maps
h2_59i21b SSR 16 No other positions
MTIC153 SSR 33.2 alfalfa - MsSledge2005 - 6 MTIC153 SSR 39.16 (cM) Automated name-based, Automated name-based View Maps
alfalfa - MsJulier2003 - 6 MTIC153 SSR 60.52 (cM) Automated name-based, Automated name-based View Maps
h2_102a8b SSR 44.2 No other positions
BE325283 CAPS 43.5 No other positions
h2_25n14a SSR 44.3 No other positions
h2_6f18b SSR -1.6 No other positions
h2_166b10a SSR 36.1 No other positions
003C02 SSR 32.5 No other positions
h2_168i20a SSR -3 No other positions
15L4R CAPS 39.8 No other positions
h2_175h23a SSR 25.4 No other positions
CrS CAPS 1.4 No other positions
R-8C10R Marker 39.8 No other positions
h2_7b19c SSR 44.3 No other positions
h2_138f22f SSR 26.3 No other positions