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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Pv02
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL_development
QTL_inorganic
QTL_root
QTL_seed
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv02
Map Start: 0 cM
Map Stop: 276.36 cM
Features by Type:
3 AFLP
9 QTL_development
1 QTL_inorganic
6 QTL_root
9 QTL_seed
1 QTL_yield
18 RAPD
67 SNP
59 SSR
4 STS
177 Total

Map Features

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Items 1 to 25 of 177.       of 8 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g2127 SNP 0 No other positions
Full maturity, bean 1-5 QTL_development 5.7 - 17.8 No other positions
Seed weight 3-2 QTL_seed 6.9 - 45.8 No other positions
Seed weight 1-4 QTL_seed 8.5 - 25.6 No other positions
g1063 SNP 12.32 No other positions
Leg188 SNP 20.91 No other positions
SSR-IAC6 SSR 22.52 No other positions
g1773 SNP 27.3 No other positions
BMb365 SSR 29.63 No other positions
Leg716 SNP 30.49 No other positions
Bng11 STS 31.53 No other positions
PVBR18 SSR 35.26 No other positions
ACAG01 AFLP 38.53 No other positions
BM156 SSR 42.33 No other positions
BM152 SSR 43.21 No other positions
BM236 SSR 43.21 No other positions
Seed length 1-1 QTL_seed 44.4 - 60.3 No other positions
TC570 SNP 46.85 No other positions
BMd18 SSR 48.58 common bean - PvMcCleanNDSU2007 - 2 Bmd18 SSR 138 - 142 (cM) Automated name-based, Automated name-based View Maps
PVBR94 SSR 50.41 No other positions
g1515 SNP 51.01 No other positions
Full maturity, bean 3-4 QTL_development 51.9 - 78.7 No other positions
Leg302 SNP 51.95 No other positions
BMb1163 SSR 52.23 No other positions
PVBR78 SSR 54.92 No other positions