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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
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Maps Pv07
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL_development
QTL_organic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv07
Map Start: 0 cM
Map Stop: 187.87 cM
Features by Type:
3 AFLP
3 QTL_development
3 QTL_organic
10 QTL_root
3 QTL_seed
3 QTL_whole-plant
4 QTL_yield
6 RAPD
33 SNP
30 SSR
8 STS
106 Total

Map Features

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Items 1 to 25 of 106.       of 5 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv07
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g2298 SNP 0 No other positions
g1719 SNP 2.91 No other positions
mtmt_Gen_00001_01_1 SNP 8.15 No other positions
Seed yield 1-8 QTL_yield 10 - 27.4 No other positions
Seed weight 3-6 QTL_seed 13.9 - 48.1 No other positions
Plant height 1-4 QTL_whole-plant 13.9 - 84.2 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B08 Plant height 1-4 QTL_whole-plant 12 - 22.8 (cM) Automated name-based, Automated name-based View Maps
Bng191 STS 16.22 No other positions
BMb191 SSR 16.83 No other positions
Root width 1-2 QTL_root 17.9 - 51.9 No other positions
g503 SNP 18.56 No other positions
g134 SNP 19.57 No other positions
BMb489 SSR 19.61 No other positions
BMc72 SSR 22.12 No other positions
BM160 SSR 23.74 No other positions
Z1902 RAPD 24.26 No other positions
BMb1148 SSR 25.15 No other positions
BM183 SSR 26.97 No other positions
Leg97 SNP 28.8 No other positions
Canopy width 1-3 QTL_whole-plant 31.8 - 84.2 No other positions
CATA06 AFLP 32.52 No other positions
ACAC01 AFLP 37.05 No other positions
Leg51 SNP 37.07 No other positions
Bng52 STS 38.65 No other positions
Bng40 STS 39.14 No other positions
Bng199 STS 39.64 No other positions