LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvConsensus_GaleanoFernandez2011_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Pv04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
QTL_development
QTL_inorganic
QTL_root
QTL_seed
QTL_whole-plant
QTL_yield
RAPD
SNP
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvConsensus_GaleanoFernandez2011_a [ View Map Set Info ]
Map Name: Pv04
Map Start: 0 cM
Map Stop: 199.87 cM
Features by Type:
4 AFLP
3 QTL_development
2 QTL_inorganic
5 QTL_root
2 QTL_seed
11 QTL_whole-plant
9 QTL_yield
19 RAPD
27 SNP
43 SSR
4 STS
129 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 129.       Previous | of 6 | Next
common bean - PvConsensus_GaleanoFernandez2011_a - Pv04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Internode length 1-2 QTL_whole-plant 75.8 - 89.6 No other positions
PVBR128 SSR 76.38 No other positions
Root length, adventitious specific 1-7 QTL_root 78.6 - 90 No other positions
Seed yield/Full maturity, bean 1-7 QTL_yield 78.7 - 87.7 No other positions
Climbing 1-3 QTL_whole-plant 79.5 - 87 No other positions
X301 RAPD 81.16 No other positions
P1601 RAPD 81.16 No other positions
Seed yield 2-5 QTL_yield 81.5 - 143.6 No other positions
BMd26 SSR 82.71 No other positions
Seed yield 2-6 QTL_yield 83.4 - 109.3 No other positions
BMb1527 SSR 84.86 No other positions
Leg88 SNP 84.87 No other positions
Seed yield/Full maturity, bean 1-8 QTL_yield 85.3 - 92.5 No other positions
BSn191 SNP 86.34 No other positions
Seed yield/Full maturity, bean 1-9 QTL_yield 88.3 - 96.2 No other positions
BSNP14 SNP 89.11 No other positions
BSn154 SNP 92.06 No other positions
g2595 SNP 92.68 No other positions
BMb136 SSR 93.23 No other positions
H1202 RAPD 94.04 No other positions
BMa2 SSR 94.85 No other positions
PV-at001 SSR 95.79 No other positions
g128 SNP 98.68 No other positions
BM149 SSR 99.16 common bean - PvMcCleanNDSU2007 - 4 BM149 SSR 65 (cM) Automated name-based, Automated name-based View Maps
BMb571 SSR 100.28 No other positions