LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps PvLG08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvCookUCDavis2009 [ View Map Set Info ]
Map Name: PvLG08
Map Start: 0 cM
Map Stop: 83.5 cM
Features by Type:
66 SNP
66 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 66.       of 3 | Next
common bean - PvCookUCDavis2009 - PvLG08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Pv_TOG894760 SNP 83.5 soybean - GmJGI8x - Gm17 TOG894760 TOG 40,801,959 - 40,806,273 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG898020 SNP 76.3 barrel medic - Mt3.0 - MtChr1 TOG898020 TOG 5,774,114 - 5,775,769 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG898020 TOG 40,085,753 - 40,088,716 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896309 SNP 73.8 soybean - GmJGI8x - Gm14 TOG896309 TOG 7,512,950 - 7,517,219 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG896309 TOG 5,452,934 - 5,457,621 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896309 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG896309_2 SNP 73.46 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896309_402 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG895571 SNP 73.8 lotus - LjKazusa200905 - LjChr5 TOG895571 TOG 3,879,425 - 3,912,672 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895571_403 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG895571_1 SNP 73.46 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP27 SNP 13.758 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A06 TOG895571 SNP 138 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG895571_579 SNP 9.1 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG895571 TOG 7,512,950 - 7,517,219 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG929836 SNP 67.7 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG929836_344 SNP 27 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 3_101_TOG929836_1_790 SNP 15.95 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG898376 SNP 64.4 peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG898376_2 SNP 56.81 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG898376 TOG 5,896,544 - 5,898,196 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG898376 TOG 4,504,213 - 4,507,393 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG898376 TOG 38,729,656 - 38,731,238 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG929859 SNP 62.8 barrel medic - Mt3.0 - MtChr3 TOG929859 TOG 36,056,571 - 36,065,947 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG929859 TOG 9,334,266 - 9,335,778 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG897521 SNP 60.4 peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG897521_1 SNP 42.68 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP76 SNP 33.767 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG897521 SNP 92.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG897521_51 SNP 24.4 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902692 SNP 57.2 cowpea - VuCookUCDavis2009 - VuLG09 4_008_TOG902692_1_489 SNP 22.98 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG902692 TOG 32,520,221 - 32,524,199 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG937860 SNP 57.2 pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG937860_161 SNP 22.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_073_TOG937860_1_227 SNP 21.66 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG937860 TOG 34,204,540 - 34,207,128 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 SNP227 SNP 12.359 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG937860 TOG 2,310,343 - 2,313,299 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG937860 TOG 9,625,310 - 9,627,784 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG906607 SNP 55.6 peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG906607_1 SNP 23.91 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG906607 TOG 688,641 - 690,353 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG906607_367 SNP 24.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm17 TOG906607 TOG 27,993,533 - 27,995,281 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894002 SNP 55.6 barrel medic - Mt3.0 - MtChr7 TOG894002 TOG 21,744,948 - 21,748,415 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG894002 TOG 34,674,185 - 34,677,949 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894002 SNP 32.2 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG894002_124 SNP 29.9 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG894002 TOG 4,760,185 - 4,763,799 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894042 SNP 55.6 soybean - GmJGI8x - Gm16 TOG894042 TOG 30,479,275 - 30,479,956 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894042 TOG 21,929,829 - 21,932,516 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG894042 TOG 5,844,331 - 5,847,291 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG913321 SNP 55.6 chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG913321 SNP 84.1 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG09 4_177_TOG913321_1_658 SNP 24.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG913321 TOG 15,029,682 - 15,032,629 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG898084 SNP 54 No other positions
Pv_TOG924275 SNP 53.2 barrel medic - Mt3.0 - MtChr8 TOG924275 TOG 34,548,934 - 34,553,702 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG924275 TOG 31,020,792 - 31,032,130 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894265 SNP 53.2 soybean - GmJGI8x - Gm16 TOG894265 TOG 3,843,777 - 3,848,208 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG894265 TOG 6,917,702 - 6,921,562 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG894265_45 SNP 39.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894265 SNP 34.2 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896261 SNP 53.2 pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG896261_480 SNP 26.1 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG896261 TOG 66,145,374 - 66,150,927 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896261 SNP 34.2 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896261 TOG 22,665,081 - 22,669,764 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm16 TOG896261 TOG 3,867,817 - 3,872,895 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG895724 SNP 53.2 chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG895724 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895724 TOG 67,258,815 - 67,261,684 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG895724 TOG 24,030,291 - 24,033,021 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_591 SNP 21 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG07 Cc_TOG895724_478 SNP 21 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_178_TOG895724_1_427 SNP 48.67 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG895724 TOG 35,095,569 - 35,097,072 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG895724 TOG 37,957,706 - 37,960,560 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG895142 SNP 53.2 barrel medic - Mt3.0 - MtChr5 TOG895142 TOG 890,731 - 898,373 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG895142 TOG 589,018 - 590,029 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr6 Ca_TOG895142 SNP 9.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm01 TOG895142 TOG 55,217,783 - 55,219,657 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG898608 SNP 52.4 peanut - AA_A.duranensis_x_A.stenosperma_e - LG15 Ah2n_TOG898608_1 SNP 31 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_249_TOG898608_1_384 SNP 44.09 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm09 TOG898608 TOG 46,444,847 - 46,447,575 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG907978 SNP 52.4 lotus - LjKazusa200905 - LjChr1 TOG907978 TOG 68,325,195 - 68,327,699 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG907978 TOG 38,593,171 - 38,594,551 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG907978_215 SNP 68.7 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG907978 TOG 24,603,049 - 24,605,524 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_163_TOG907978_2_215 SNP 45.4 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG907978 SNP 35.8 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG907937 SNP 51 soybean - GmJGI8x - Gm19 TOG907937 TOG 40,636,022 - 40,638,588 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG907937 TOG 38,048,306 - 38,055,497 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG907937 TOG 72,139,914 - 72,141,779 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG907937 SNP 45.8 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG907937 TOG 26,397,790 - 26,402,199 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG903989 SNP 51 soybean - GmJGI8x - Gm19 TOG903989 TOG 41,904,818 - 41,907,591 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_300_TOG903989_2_1639 SNP 34.43 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG903989 SNP 47 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896975 SNP 51 cowpea - VuCookUCDavis2009 - VuLG08 3_175_TOG896975_2_493 SNP 34.43 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG896975 TOG 39,379,565 - 39,384,325 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG08 3_040_TOG896975_2_294 SNP 34.43 (cM) Automated name-based, Automated name-based View Maps