LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
dCAPS
RAPD
RFLP
size-indel
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 10
Map Start: 0 cM
Map Stop: 98 cM
Features by Type:
7 CAPS
4 RAPD
3 RFLP
2 SSR
2 STS
7 dCAPS
2 size-indel
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
common bean - PvMcCleanNDSU2007 - 10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
g2221 CAPS 0 No other positions
DROE9c RAPD 6 No other positions
Bng200 RFLP 8 common bean - BAT93_x_JALOEEP558_b - B10 Bng200 RFLP 7.39 (cM) Automated name-based, Automated name-based View Maps
g2521 CAPS 13 No other positions
DROE9a RAPD 15 No other positions
g1320 dCAPS 21 No other positions
g1029 CAPS 21 - 29 No other positions
ANA-M09 RAPD 21 - 29 No other positions
BIP-J17S STS 21 - 29 No other positions
g1383 dCAPS 29 No other positions
g1994 dCAPS 42 No other positions
Bng68 RFLP 42 No other positions
D1580 RFLP 47 common bean - BAT93_x_JALOEEP558_b - B10 D1580 RFLP 42.57 (cM) Automated name-based, Automated name-based View Maps
L-L4S STS 56 No other positions
g2600 CAPS 59 No other positions
g2560 CAPS 64 No other positions
g2268 size-indel 66 No other positions
Bmd42 SSR 66 common bean - PvConsensus_GaleanoFernandez2011_a - Pv10 BMd42 SSR 9.81 (cM) Automated name-based, Automated name-based View Maps
g1724 dCAPS 66 - 72 No other positions
g2418 dCAPS 72 No other positions
g1341 size-indel 80 No other positions
g2260 CAPS 84 No other positions
g1661 dCAPS 87 No other positions
DROF1a RAPD 87 - 97 No other positions
BM212 SSR 97 common bean - PvConsensus_GaleanoFernandez2011_a - Pv10 BM212 SSR 0 (cM) Automated name-based, Automated name-based View Maps