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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvMcCleanNDSU2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
dCAPS
Phenotypic
RAPD
RFLP
size-indel
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvMcCleanNDSU2007 [ View Map Set Info ]
Map Name: 2
Map Start: 0 cM
Map Stop: 210 cM
Features by Type:
24 CAPS
1 Phenotypic
5 RAPD
8 RFLP
4 SSR
10 dCAPS
4 size-indel
56 Total

Map Features

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Items 1 to 25 of 56.       of 3 | Next
common bean - PvMcCleanNDSU2007 - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
DROS3b RAPD 0 No other positions
g1194 CAPS 39 No other positions
g656 dCAPS 8 No other positions
g364 CAPS 8 - 25 No other positions
I Phenotypic 8 - 25 No other positions
S2 size-indel 8 - 25 No other positions
g2127 dCAPS 25 No other positions
g2427 CAPS 31 No other positions
g693 CAPS 33 No other positions
g774 CAPS 34 No other positions
g2540 dCAPS 35 No other positions
g2577 dCAPS 36 No other positions
D1367 RFLP 45 No other positions
D1287 RFLP 47 common bean - BAT93_x_JALOEEP558_b - B02 D1287 RFLP 57.76 (cM) Automated name-based, Automated name-based View Maps
g1063 dCAPS 47 - 50 No other positions
g2348 CAPS 50 No other positions
g1132 dCAPS 56 No other positions
g1247 CAPS 61 No other positions
D0166 RFLP 68 common bean - BAT93_x_JALOEEP558_b - B02 D0166 RFLP 72.97 (cM) Automated name-based, Automated name-based View Maps
g893 CAPS 71 No other positions
g2113 CAPS 78 No other positions
DROG5a RAPD 78 No other positions
g680 CAPS 36 - 39 No other positions
g1784 CAPS 81 No other positions
g1773 CAPS 81 - 91 No other positions