LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhComposite_SujayGowda2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps AhXI
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhComposite_SujayGowda2012_a [ View Map Set Info ]
Map Name: AhXI
Map Start: 0 cM
Map Stop: 51.856 cM
Features by Type:
5 SSR
5 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
peanut - TT_AhComposite_SujayGowda2012_a - AhXI
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Ah-193 SSR 0 peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM286 SSR 50.753 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXI Ah-193 SSR 26.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 Ah-193 SSR 37.6 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A01 Ah-193 SSR 219.3 (cM) Automated name-based, Automated name-based View Maps
GM1971b SSR 19.506 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXI GM1971b SSR 28.96 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 GM1971b SSR 50.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXI GM1971b SSR 4.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXI GM1971b SSR 24.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXI GM1971b SSR 6 (cM) Automated name-based, Automated name-based View Maps
GM2724b SSR 25.439 peanut - TT_AhConsensus_GautamiFonceka2012_a - B01 GM2724b.B01 SSR 24.25 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhI GM2724b SSR 155.41 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 GM2724b.A01 SSR 45.55 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXI GM2724b SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG01 GM2724b SSR 8.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXI GM2724b SSR 0 (cM) Automated name-based, Automated name-based View Maps
pPGSseq13A10 SSR 38.388 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXI pPGSSeq13A10 SSR 112.64 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXI pPGSSeq13A10 SSR 72.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXI pPGSseq13A10 SSR 81.9 (cM) Automated name-based, Automated name-based View Maps
TC4H02 SSR 51.856 peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 TC4H02 SSR 85.65 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A01 TC4H02 SSR 80.114 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXI TC4H02 SSR 24.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXI TC4H02 SSR 55.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXI TC4H02 SSR 74.29 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXI TC4H02 SSR 64.5 (cM) Automated name-based, Automated name-based View Maps