LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhComposite_SujayGowda2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps AhXIV
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhComposite_SujayGowda2012_a [ View Map Set Info ]
Map Name: AhXIV
Map Start: 0 cM
Map Stop: 72.136 cM
Features by Type:
14 SSR
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
peanut - TT_AhComposite_SujayGowda2012_a - AhXIV
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM2687 SSR 0 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B03 GM2687 SSR 39.625 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM2687 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 GM2687 SSR 236.14 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIV GM2687 SSR 33.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV GM2687 SSR 33.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM2687 SSR 0 (cM) Automated name-based, Automated name-based View Maps
GM1162 SSR 9.838 peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1162 SSR 112.088 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM1162 SSR 50.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1162 SSR 34.5 (cM) Automated name-based, Automated name-based View Maps
GM1386 SSR 19.62 peanut - TT_TG26_x_GPBD4_a - AhXIV GM1386 SSR 29.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1386 SSR 15.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A02 GM1386 SSR 56.718 (cM) Automated name-based, Automated name-based View Maps
GM1021 SSR 22.697 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIX GM1021 SSR 102.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM1021 SSR 59.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1021 SSR 51.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM1021 SSR 57.166 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG15 GM1021 SSR 52.8 (cM) Automated name-based, Automated name-based View Maps
GM2730 SSR 32.002 peanut - TT_TG26_x_GPBD4_a - AhXIV GM2730 SSR 74.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM2730 SSR 73.6 (cM) Automated name-based, Automated name-based View Maps
GM1740 SSR 36.062 peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1740 SSR 98.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM1740 SSR 100.1 (cM) Automated name-based, Automated name-based View Maps
GM1572 SSR 37.399 peanut - AA_A.duranensis_x_A.duranensis_a - A06 GM1572 SSR 70.06 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM1572 SSR 111.7 (cM) Automated name-based, Automated name-based View Maps
GM955 SSR 39.418 peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 GM955 SSR 58.69 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG17 GM955 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A04 GM955 SSR 95.265 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXIV GM955 SSR 208.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG07 GM955 SSR 44.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVII GM955 SSR 42.61 (cM) Automated name-based, Automated name-based View Maps
GM1846 SSR 44.341 peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1846 SSR 118.2 (cM) Automated name-based, Automated name-based View Maps
pPGSseq16C06 SSR 45.932 peanut - TT_TG26_x_GPBD4_a - AhXIV pPGSseq16C06 SSR 136.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIV pPGSSeq16C06 SSR 55.4 (cM) Automated name-based, Automated name-based View Maps
GM840 SSR 50.582 peanut - TT_TG26_x_GPBD4_a - AhXIV GM840 SSR 191.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM840 SSR 174.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A07 GM840 SSR 79.56 (cM) Automated name-based, Automated name-based View Maps
GM1734 SSR 52.04 peanut - TT_TG26_x_GPBD4_a - AhXIV GM1734 SSR 151.1 (cM) Automated name-based, Automated name-based View Maps
GM1773 SSR 64.834 peanut - TT_TG26_x_GPBD4_a - AhXIV GM1773 SSR 172.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXIV GM1773 SSR 158.1 (cM) Automated name-based, Automated name-based View Maps
GM912 SSR 72.136 peanut - TT_TAG24_x_GPBD4_a - AhXIV GM912 SSR 192.4 (cM) Automated name-based, Automated name-based View Maps