LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_GautamiFonceka2012_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_GautamiFonceka2012_a [ View Map Set Info ]
Map Name: A10
Map Start: 0 cM
Map Stop: 199.16 cM
Features by Type:
47 SSR
47 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 47.       of 2 | Next
peanut - TT_AhConsensus_GautamiFonceka2012_a - A10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GM2531.A10 SSR 0 peanut - TT_AhComposite_SujayGowda2012_a - AhXII GM2531 SSR 17.747 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXII GM2531 SSR 34.1 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXX GM2531 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXII GM2531 SSR 30 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 GM2531 SSR 64.207 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM2531.B10 SSR 61.38 (cM) Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG14 GM2531 SSR 0 (cM) Automated name-based, Automated name-based View Maps
GM1788 SSR 2.58 peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1788 SSR 69.749 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GM1788 SSR 31.782 (cM) Automated name-based, Automated name-based View Maps
seq3E10.A10 SSR 3.28 peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII pPGPSeq3E10 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII pPGPSeq3E10 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A05 Seq3E10 SSR 75.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 seq3E10.B10 SSR 30.35 (cM) Automated name-based View Maps
TC11B04.A10 SSR 32.78 peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 TC11B04.B05 SSR 92.81 (cM) Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhIV TC11B04 SSR 30.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A04 TC11B04 SSR 16 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII TC11B04 SSR 29.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIV TC11B04 SSR 17.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A04 TC11B04.A04 SSR 31.6 (cM) Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 TC11B04 SSR 90.713 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII TC11B04 SSR 29.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV TC11B04 SSR 20.067 (cM) Automated name-based, Automated name-based View Maps
GM647 SSR 56.88 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GA57 SSR 85.976 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GM647 SSR 115.197 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII GM647 SSR 53.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII GM647 SSR 53.6 (cM) Automated name-based, Automated name-based View Maps
GM2411 SSR 57.61 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GM2411 SSR 68.836 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG1 GM2411 SSR 55.8 (cM) Automated name-based, Automated name-based View Maps
TC1G04 SSR 63.05 peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC1G04 SSR 17.41 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG05 Ah1TC1G04 SSR 19.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhIV TC1G04 SSR 60.972 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A02 TC1G04 SSR 86.1 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC1G04 SSR 32.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhIV TC1G04 SSR 136.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA10 TC1G04 SSR 3.325 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB10 TC1G04 SSR 17.2 (cM) Automated name-based, Automated name-based View Maps
TC7H11.A10 SSR 67.15 peanut - TT_TAG24_x_GPBD4_a - AhXII TC7H11 SSR 23.2 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A10 TC7H11 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB10 TC7H11 SSR 27.805 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_b - LG05 Ah2TC7H11 SSR 29 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_a - A02 TC7H11 SSR 65.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TC7H11 SSR 50.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA10 TC7H11 SSR 34.289 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXII TC7H11 SSR 70.4 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_b - B10 TC7H11 SSR 101.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 TC7H11.B10 SSR 54.88 (cM) Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII TC7H11 SSR 14.376 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXII TC7H11 SSR 27.6 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS76_x_CSMG84-1_a - LG12 TC7H11 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXII TC7H11 SSR 70.4 (cM) Automated name-based, Automated name-based View Maps
seq4H11.A10 SSR 72.95 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA10 Seq4H11 SSR 6.664 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B04 seq4H11.B04 SSR 45.7 (cM) Automated name-based View Maps
seq4H11_A1 SSR 73.47 peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - A10 Seq4H11_A1 SSR 47.4 (cM) Automated name-based, Automated name-based View Maps
AC1G11.A10 SSR 76.37 peanut - TT_AhConsensus_GautamiFonceka2012_a - B03 AC1G11.B03 SSR 211.08 (cM) Automated name-based View Maps
AC2B03.A10 SSR 76.37 peanut - BB_A.ipaensis_x_A.magna_a - BB10 AC2B03 SSR 23.938 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 AC2B03.B10 SSR 44.4 (cM) Automated name-based View Maps
AC3C02_B1 SSR 76.37 No other positions
Ah3TC23D04 SSR 76.37 No other positions
Ah3TC23F04_A1 SSR 76.37 No other positions
seq11D4 SSR 76.37 peanut - AA_A.duranensis_x_A.stenosperma_d - A10 Seq11D4 SSR 44.4 (cM) Automated name-based, Automated name-based View Maps
seq12F7.A10 SSR 76.37 peanut - TT_AhConsensus_GautamiFonceka2012_a - A01 seq12F7.A01 SSR 100.26 (cM) Automated name-based View Maps
seq14F5 SSR 76.37 No other positions
seq9F1 SSR 77.07 No other positions
seq11F12 SSR 77.38 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 Seq11F12 SSR 87.46 (cM) Automated name-based, Automated name-based View Maps
GA161 SSR 77.88 peanut - TT_VG9514_x_TAG24_a - A10 GM692 SSR 50.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG1 GA161 SSR 16.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GM692 SSR 64.911 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GA161 SSR 88.8 (cM) Automated name-based, Automated name-based View Maps
GA57 SSR 78.08 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GA57 SSR 85.976 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GM647 SSR 115.197 (cM) Automated name-based, Automated name-based View Maps
seq18C2 SSR 78.08 No other positions
GA79 SSR 78.18 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A10 GA79 SSR 81.239 (cM) Automated name-based, Automated name-based View Maps
GM633.A10 SSR 78.62 peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhV GM633 SSR 143.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhV GM633 SSR 71.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A05 GM633 SSR 52.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GA35 SSR 61.533 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 GM633.A05 SSR 123.81 (cM) Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhV GM633 SSR 8.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhV GM633 SSR 25.228 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05 GM633 SSR 60.403 (cM) Automated name-based, Automated name-based View Maps