LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A04
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A04
Map Start: 0 cM
Map Stop: 106.778 cM
Features by Type:
6 CAPS
183 SSR
3 STS
9 Marker
12 transposon
213 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 213.       of 9 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A04
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AHGS2793_c1 SSR 0 No other positions
AHS0075 SSR 2.944 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHS0075 SSR 6.147 (cM) Automated name-based, Automated name-based View Maps
AHGS1955 SSR 3.619 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS1955 SSR 4.379 (cM) Automated name-based, Automated name-based View Maps
AHGS1432_c1 SSR 4.515 No other positions
AhTE0803 transposon 5.137 No other positions
TC21A09 SSR 6.162 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 TC21A09 SSR 2.269 (cM) Automated name-based, Automated name-based View Maps
AHGS1849 SSR 6.669 peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHGS1849 SSR 3.436 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS1849 SSR 1.701 (cM) Automated name-based, Automated name-based View Maps
RGA2 Marker 8.533 No other positions
AHGS2393_c1 SSR 10.475 No other positions
AHGS2322_c1 SSR 11.347 No other positions
gi338 SSR 13.718 peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 gi338 SSR 6.042 (cM) Automated name-based, Automated name-based View Maps
AHGS2442_c1 SSR 14.919 No other positions
AHS0318 SSR 15.184 peanut - AA_A.duranensis_x_A.stenosperma_b - AA04 AHS0318 SSR 8.019 (cM) Automated name-based, Automated name-based View Maps
AHGS2539_c1 SSR 16.174 No other positions
AHGS3130_c1 SSR 17.073 No other positions
AHGS2520_c1 SSR 17.868 No other positions
AHGS2531_c1 SSR 19.104 No other positions
AHGS2243_c1 SSR 20.127 No other positions
AHGS3720 SSR 20.531 No other positions
AHS0335 SSR 20.754 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHS0335 SSR 23.677 (cM) Automated name-based, Automated name-based View Maps
AHGS1886_c1 SSR 20.879 No other positions
AHS2375 SSR 21.922 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHS2375 SSR 24.864 (cM) Automated name-based, Automated name-based View Maps
AHGS2638_c1 SSR 23.976 No other positions
AHGS2487 SSR 24.383 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHGS2487 SSR 28.153 (cM) Automated name-based, Automated name-based View Maps
AHS0527 SSR 25.508 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA04 AHS0527 SSR 28.947 (cM) Automated name-based, Automated name-based View Maps