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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A05
Map Start: 0 cM
Map Stop: 126.011 cM
Features by Type:
4 CAPS
145 SSR
8 STS
9 Marker
23 transposon
189 Total

Map Features

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Items 1 to 25 of 189.       of 8 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AhTE0361 transposon 0 No other positions
Leg231 CAPS 7.097 No other positions
AHGS2791_c1 SSR 12.612 No other positions
AHS2897_c1 SSR 13.234 No other positions
GM1702 SSR 14.086 peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 GM1702 SSR 211.61 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A05 GM1702 SSR 111.968 (cM) Automated name-based, Automated name-based View Maps
AHGS2666_c1 SSR 15.735 No other positions
AHGS1413 SSR 17.982 No other positions
AHS0248 SSR 18.661 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHS0248 SSR 41.514 (cM) Automated name-based, Automated name-based View Maps
AHGS2319_c1 SSR 20.267 No other positions
AHGS0457_c1 SSR 21.352 No other positions
RGA28 Marker 21.776 No other positions
AhTE0820 transposon 22.014 No other positions
AHGS2757 SSR 23.022 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHGS2757 SSR 37.087 (cM) Automated name-based, Automated name-based View Maps
CPI02C10 Marker 23.282 No other positions
AHS2382_c2 SSR 24.4 No other positions
AHGS1697 SSR 24.783 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHGS1697 SSR 35.779 (cM) Automated name-based, Automated name-based View Maps
AHS0649 SSR 26.263 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHS0649 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 AHS0649 SSR 21.969 (cM) Automated name-based, Automated name-based View Maps
Leg224 CAPS 26.699 peanut - AA_A.duranensis_x_A.stenosperma_a - A05 Leg224 CAPS 183.5 (cM) Automated name-based, Automated name-based View Maps
AHGS2330_c1 SSR 27.083 No other positions
AhTE0523 transposon 27.2 No other positions
AhTE0278 transposon 28.284 No other positions
AHGS1477 SSR 28.595 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHGS1477 SSR 11.457 (cM) Automated name-based, Automated name-based View Maps
AHGS3215 SSR 29.008 peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 AHGS3215 SSR 16.517 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHGS3215 SSR 6.072 (cM) Automated name-based, Automated name-based View Maps
Ah614 SSR 29.152 peanut - TT_AhConsensus_GautamiFonceka2012_a - A05 Ah614 SSR 173.88 (cM) Automated name-based, Automated name-based View Maps
AHS1735 SSR 29.892 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA05 AHS1735 SSR 7.156 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA05 AHS1735 SSR 20.815 (cM) Automated name-based, Automated name-based View Maps