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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A06
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
CAPS
Marker
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: A06
Map Start: 0 cM
Map Stop: 136.411 cM
Features by Type:
5 CAPS
157 SSR
5 STS
9 Marker
11 transposon
187 Total

Map Features

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Items 1 to 25 of 187.       of 8 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - A06
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC19A02_c1 Marker 0 No other positions
AHGS1727_c2 SSR 8.477 No other positions
AHGS1375_c1 SSR 14.231 No other positions
AHS1359 SSR 16.06 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHS1359 SSR 16.039 (cM) Automated name-based, Automated name-based View Maps
AHGS1948_c1 SSR 16.896 No other positions
AHGS1749_c1 SSR 18.002 No other positions
TC42A02_c1 SSR 18.387 No other positions
AHGS2139_c2 SSR 24.39 No other positions
AHGS2142_c1 SSR 25.039 No other positions
Leg81 CAPS 29.098 No other positions
TC28C01 SSR 30.814 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 TC28C01 SSR 30.965 (cM) Automated name-based, Automated name-based View Maps
TC35F05 SSR 31.24 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 TC35F05 SSR 33.337 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A06 TC35F05 SSR 57.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 TC35F05 SSR 0 (cM) Automated name-based, Automated name-based View Maps
PM377 SSR 32.947 peanut - TT_TAG24_x_GPBD4_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhVI PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - A06 PM377 SSR 90.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 PM377 SSR 6.79 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG10 PM377 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI PM377 SSR 25.5 (cM) Automated name-based, Automated name-based View Maps
AHGS1882_c1 SSR 33.111 No other positions
Seq19F04 SSR 33.306 peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 Seq19F04 SSR 5.32 (cM) Automated name-based, Automated name-based View Maps
AHS2837 SSR 33.621 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHS2837 SSR 33.927 (cM) Automated name-based, Automated name-based View Maps
AC2H11_c1 SSR 33.872 peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B06 AC2H11_c2 SSR 80.947 (cM) Automated name-based View Maps
AHGS3209 SSR 34.77 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHGS3209 SSR 35.251 (cM) Automated name-based, Automated name-based View Maps
AHS0149 SSR 34.812 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHS0149 SSR 35.256 (cM) Automated name-based, Automated name-based View Maps
AHGS2616_c1 SSR 35.088 No other positions
AHGS2414 SSR 35.284 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHGS2414 SSR 35.595 (cM) Automated name-based, Automated name-based View Maps
AHS0014_c1 SSR 35.317 No other positions
AHGS2149_c1 SSR 35.535 No other positions
AHGS1756_c1 SSR 35.766 No other positions
AHGS2920 SSR 35.909 peanut - AA_A.duranensis_x_A.stenosperma_b - AA06 AHGS2920 SSR 8.393 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TA06 AHGS2920 SSR 34.831 (cM) Automated name-based, Automated name-based View Maps