LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_AhConsensus_ShirasawaBertioli2013_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
transposon
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_AhConsensus_ShirasawaBertioli2013_a [ View Map Set Info ]
Map Name: B10
Map Start: 0 cM
Map Stop: 121.342 cM
Features by Type:
142 SSR
1 STS
21 transposon
164 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 164.       of 7 | Next
peanut - TT_AhConsensus_ShirasawaBertioli2013_a - B10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Seq8D09_c2 SSR 0 No other positions
Seq3B06_c2 SSR 0.957 No other positions
GM1483_c2 SSR 3.239 No other positions
AHS0161 SSR 10.565 peanut - TT_Tifrunner_x_GT-C20_b - LG5 AHS0161 SSR 98.1 (cM) Automated name-based, Automated name-based View Maps
GM1009 SSR 16.526 peanut - TT_AhConsensus_GautamiFonceka2012_a - A09 GM1009.A09 SSR 125.67 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM1009.B10 SSR 151.99 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhXIII GM1009 SSR 88.06 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII GM1009 SSR 56.604 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_GPBD4_a - AhXII GM1009 SSR 87.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TAG24_x_ICGV86031_a - LG_AhXIII GM1009 SSR 92.2 (cM) Automated name-based, Automated name-based View Maps
AHGS2543 SSR 18.337 No other positions
GM2032 SSR 24.303 peanut - TT_TG26_x_GPBD4_a - AhXII GM2032 SSR 95.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhIV GM2032 SSR 271.97 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM2032 SSR 142.53 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 GM2032 SSR 110.208 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG5 GM2032 SSR 70.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B10 GM2032 SSR 84.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII GM2032 SSR 51.744 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG04 GM2032 SSR 30.4 (cM) Automated name-based, Automated name-based View Maps
AHGS2437_c2 SSR 27.003 No other positions
AhTE0231 transposon 28.936 No other positions
AhTE0555 transposon 31.869 No other positions
IPAHM475 SSR 32.905 peanut - TT_TG26_x_GPBD4_b - LG01 IPAHM475 SSR 145.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII IPAHM475 SSR 42.503 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B10 IPAHM475 SSR 70.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 IPAHM475 SSR 121.43 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXII IPAHM475 SSR 74.2 (cM) Automated name-based, Automated name-based View Maps
GM2165 SSR 35.414 peanut - TT_Tifrunner_x_GT-C20_b - LG5 GM2165 SSR 74.4 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM2165 SSR 119.93 (cM) Automated name-based, Automated name-based View Maps
AhTE0487 transposon 36.808 No other positions
GM1742 SSR 38.688 peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM1742 SSR 118.73 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG5 GM1742 SSR 63.9 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_VG9514_x_TAG24_a - B10 GM1742 SSR 61.8 (cM) Automated name-based, Automated name-based View Maps
AHGS1727_c5 SSR 39.203 No other positions
AHS2037_c2 SSR 40.473 No other positions
GM1573 SSR 41.007 peanut - TT_TAG24_x_GPBD4_a - AhXII GM1573 SSR 64.7 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhComposite_SujayGowda2012_a - AhXII GM1573 SSR 38.297 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_Tifrunner_x_GT-C20_b - LG5 GM1573 SSR 66.5 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiPandey2012_a - LG_AhVI GM1573 SSR 147.15 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - A06 GM1573.A06 SSR 230.8 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_ICGS44_x_ICGS76_a - LG06 GM1573 SSR 0 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_TG26_x_GPBD4_a - AhXII GM1573 SSR 83.3 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_AhConsensus_GautamiFonceka2012_a - B10 GM1573.B10 SSR 130.53 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 GM1573 SSR 74.425 (cM) Automated name-based, Automated name-based View Maps
AHGS2223 SSR 42.708 No other positions
AHGS1446_c3 SSR 43.642 No other positions
AHGS1481_c2 SSR 45.525 No other positions
AHS0139 SSR 45.788 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB10 AHS0139 SSR 25.18 (cM) Automated name-based, Automated name-based View Maps
AHGS1669 SSR 47.411 peanut - BB_A.ipaensis_x_A.magna_b - B10 AHGS1669 SSR 19.1 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB10 AHGS1669 SSR 28.295 (cM) Automated name-based, Automated name-based View Maps
peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB10 AHGS1669 SSR 25.72 (cM) Automated name-based, Automated name-based View Maps
AhTE1014 transposon 49.125 No other positions
TC23H10 SSR 50.769 peanut - TT_RunnerIAC886_x_A.ipaensis-A.duranensis_a - TB10 TC23H10 SSR 14.001 (cM) Automated name-based, Automated name-based View Maps
AHGS1708 SSR 51.006 peanut - BB_A.ipaensis_x_A.magna_b - B10 AHGS1708 SSR 24.7 (cM) Automated name-based, Automated name-based View Maps
peanut - BB_A.ipaensis_x_A.magna_a - BB10 AHGS1708 SSR 28.504 (cM) Automated name-based, Automated name-based View Maps