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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Fleur11_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A02
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_pod
QTL_stress-tolerance
QTL_whole-plant
QTL_yield
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: A02
Map Start: 0 cM
Map Stop: 76.1 cM
Features by Type:
3 QTL_pod
1 QTL_stress-tolerance
2 QTL_whole-plant
2 QTL_yield
17 SSR
25 Total

Map Features

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Items 1 to 25 of 25.
peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - A02
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
seq11H01_A SSR 0 No other positions
PM230_A SSR 0 No other positions
Pod beak 1-2 QTL_pod 1 - 65 No other positions
TC28B01_A SSR 4.6 No other positions
PM032_A SSR 6.9 No other positions
TC4F12_A SSR 15 No other positions
RM13A09_A SSR 38 No other positions
Seq18B11_A SSR 40.5 No other positions
Seq11G03_A SSR 42.8 No other positions
Pod beak 1-1 QTL_pod 43 - 68 No other positions
Pod constriction 1-1 QTL_pod 43 - 68 No other positions
Seq11G07_A SSR 43.9 No other positions
Seq1B09_A SSR 43.9 No other positions
IPAHM406_A SSR 43.9 No other positions
Seq12E03_A SSR 45 No other positions
RM2H10_A SSR 47.3 No other positions
Ag39_A SSR 51.9 No other positions
TC1E01_A SSR 57.6 No other positions
Pod harvest index 1-1 QTL_yield 67 - 76.1 No other positions
Haulm weight 1-1 QTL_whole-plant 68 - 76.1 No other positions
RI2A06_A SSR 70.4 No other positions
Drought tolerance 1-5 QTL_stress-tolerance 73 - 76.1 No other positions
Haulm weight 1-2 QTL_whole-plant 73 - 76.1 No other positions
Pod harvest index 1-2 QTL_yield 73 - 76.1 No other positions
Seq2F05_A SSR 76.1 No other positions