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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Fleur11_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_pod
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: A10
Map Start: 0 cM
Map Stop: 83.3 cM
Features by Type:
3 QTL_pod
15 SSR
18 Total

Map Features

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Items 1 to 18 of 18.
peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - A10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC38G04_A SSR 0 No other positions
Pod constriction 1-6 QTL_pod 21 - 81.3 No other positions
TC11B04_A2 SSR 31.2 No other positions
Pod width 1-4 QTL_pod 37 - 67 No other positions
Pod width 1-5 QTL_pod 40 - 63 No other positions
TC1G04_A SSR 40.5 No other positions
Seq4H11_A1 SSR 47.4 peanut - TT_AhConsensus_GautamiFonceka2012_a - A10 seq4H11_A1 SSR 73.47 (cM) Automated name-based, Automated name-based View Maps
Seq14F05_A SSR 55.4 No other positions
AC2B03_A SSR 57.7 No other positions
TC23F04_A1 SSR 57.7 No other positions
AC3C02_A SSR 57.7 No other positions
TC23D04_A SSR 57.7 No other positions
seq12F07_A SSR 57.7 No other positions
AC1G11_A SSR 57.7 No other positions
seq11D04_A SSR 57.7 No other positions
Seq9F01_A SSR 59.4 No other positions
PM145_A SSR 68.1 No other positions
AC3F07_A SSR 83.3 No other positions