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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set peanut-TT_Fleur11_x_A.ipaensis-A.duranensis_a
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps B05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL_pod
QTL_seed
QTL_stress-tolerance
QTL_whole-plant
QTL_yield
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a [ View Map Set Info ]
Map Name: B05
Map Start: 0 cM
Map Stop: 57.9 cM
Features by Type:
4 QTL_pod
2 QTL_seed
1 QTL_stress-tolerance
1 QTL_whole-plant
1 QTL_yield
8 SSR
17 Total

Map Features

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Items 1 to 17 of 17.
peanut - TT_Fleur11_x_A.ipaensis-A.duranensis_a - B05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC19D09_B SSR 0 No other positions
Stature 1-4 QTL_whole-plant 0 - 7 No other positions
Pod width 1-8 QTL_pod 0 - 43 No other positions
Seed width 1-7 QTL_seed 0 - 47.5 No other positions
Pod weight 1-3 QTL_pod 0 - 50 No other positions
Drought tolerance 1-2 QTL_stress-tolerance 0 - 51 No other positions
Pod weight 1-4 QTL_pod 0 - 52 No other positions
Pod width 1-9 QTL_pod 1 - 39 No other positions
Seed width 1-8 QTL_seed 4 - 46 No other positions
Seed weight per plant 1-1 QTL_yield 6 - 57.9 No other positions
PM050_B SSR 18.1 No other positions
IPAHM354_B SSR 21.5 No other positions
seq19D06_B SSR 39.4 No other positions
TC22F10_B SSR 45.2 No other positions
AC2C02_B1 SSR 47.5 peanut - TT_AhConsensus_GautamiFonceka2012_a - B05 AC2C02_B1 SSR 34.3 (cM) Automated name-based, Automated name-based View Maps
TC6E01_B SSR 49.8 peanut - TT_VG9514_x_TAG24_a - A05 TC6E01_b SSR 31.5 (cM) Automated name-based, Automated name-based View Maps
TC19E01_B SSR 57.9 No other positions